Variant report

Variant	rs9593107
Chromosome Location	chr13:76215437-76215438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76208613..76210805-chr13:76214150..76216222,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261105	Chromatin interaction
ENSG00000136153	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11842861	0.87[AFR][1000 genomes]
rs12017010	0.85[AFR][1000 genomes]
rs9593110	0.87[AFR][1000 genomes]
rs9593114	0.87[AFR][1000 genomes]
rs9600510	1.00[AFR][1000 genomes]
rs9600512	1.00[AFR][1000 genomes]
rs9600513	1.00[AFR][1000 genomes]
rs9600522	0.85[AFR][1000 genomes]
rs9600523	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76211400-76215600	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
2	chr13:76211400-76226200	Weak transcription	Left Ventricle	heart
3	chr13:76211600-76215800	Weak transcription	Gastric	stomach
4	chr13:76211600-76215800	Transcr. at gene 5' and 3'	Osteobl	bone
5	chr13:76211600-76216200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr13:76211600-76232800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr13:76211600-76235600	Weak transcription	Ovary	ovary
8	chr13:76211600-76235600	Weak transcription	Pancreas	Pancrea
9	chr13:76211800-76215600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr13:76211800-76217800	Weak transcription	NHEK	skin
11	chr13:76211800-76218800	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr13:76211800-76230000	Weak transcription	Thymus	Thymus
13	chr13:76212000-76223200	Weak transcription	Fetal Stomach	stomach
14	chr13:76212200-76216200	Weak transcription	HUVEC	blood vessel
15	chr13:76212200-76235600	Weak transcription	Aorta	Aorta
16	chr13:76212400-76230000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr13:76212400-76240400	Weak transcription	HMEC	breast
18	chr13:76212600-76217800	Weak transcription	Dnd41	blood
19	chr13:76212600-76222800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr13:76212800-76224600	Weak transcription	Fetal Kidney	kidney
21	chr13:76213000-76221600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr13:76213400-76215600	Enhancers	GM12878-XiMat	blood
23	chr13:76213400-76267800	Weak transcription	Primary T cells from cord blood	blood
24	chr13:76213800-76235600	Weak transcription	Psoas Muscle	Psoas
25	chr13:76214400-76215800	Genic enhancers	NHLF	lung
26	chr13:76214800-76215600	Genic enhancers	HSMM	muscle
27	chr13:76214800-76217600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr13:76215000-76215600	Genic enhancers	HSMMtube	muscle
29	chr13:76215000-76215800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr13:76215000-76217400	Strong transcription	NH-A	brain
31	chr13:76215200-76215600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr13:76215200-76216000	Genic enhancers	NHDF-Ad	bronchial
33	chr13:76215200-76216400	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr13:76215200-76216600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr13:76215400-76215800	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr13:76215400-76216400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr13:76215400-76217200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr13:76215400-76217200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr13:76215400-76218400	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr13:76215400-76258200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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