Variant report

Variant	rs12017010
Chromosome Location	chr13:76287286-76287287
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:76279169..76281047-chr13:76286022..76288231,2	MCF-7	breast:
2	chr13:76276163..76278819-chr13:76286604..76288192,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs9593107	0.85[AFR][1000 genomes]
rs9600510	0.85[AFR][1000 genomes]
rs9600512	0.85[AFR][1000 genomes]
rs9600513	0.85[AFR][1000 genomes]
rs9600522	1.00[AFR][1000 genomes]
rs9600523	1.00[AFR][1000 genomes]
rs9600525	0.85[AFR][1000 genomes]
rs9600532	0.91[AFR][1000 genomes]
rs9600547	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751152	chr13:76144199-76288418	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv949152	chr13:76211453-76366622	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv900579	chr13:76244056-76307981	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1091	chr13:76282392-76327906	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76259600-76294400	Weak transcription	Ovary	ovary
2	chr13:76279400-76288600	Weak transcription	Psoas Muscle	Psoas
3	chr13:76279400-76308000	Weak transcription	Left Ventricle	heart
4	chr13:76280400-76287800	Weak transcription	Stomach Mucosa	stomach
5	chr13:76280400-76289800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:76280400-76289800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr13:76280600-76287400	Weak transcription	NH-A	brain
8	chr13:76280600-76288000	Weak transcription	HSMMtube	muscle
9	chr13:76280800-76289800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:76281000-76287400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:76281000-76287800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr13:76283600-76308000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr13:76285800-76289000	Genic enhancers	Osteobl	bone
14	chr13:76286000-76289200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr13:76286200-76289800	Weak transcription	Fetal Heart	heart
16	chr13:76286400-76288000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr13:76286400-76288600	Strong transcription	HSMM	muscle
18	chr13:76286600-76287400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr13:76286600-76287600	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr13:76286600-76287800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr13:76286600-76287800	Weak transcription	Hela-S3	cervix
22	chr13:76286600-76291800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr13:76286600-76292600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr13:76286800-76287800	Weak transcription	NHLF	lung
25	chr13:76287200-76289000	Strong transcription	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links