Variant report

Variant	rs11844307
Chromosome Location	chr14:81981026-81981027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11846697	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7147799	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010569	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81941800-81985600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:81960200-81983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:81960400-81985800	Weak transcription	Stomach Mucosa	stomach
4	chr14:81964200-81985200	Weak transcription	K562	blood
5	chr14:81964400-81983000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:81967600-81999600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:81970400-81983200	Weak transcription	Hela-S3	cervix
8	chr14:81970800-81983200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr14:81971200-81983600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr14:81972600-81983600	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr14:81972600-81987000	Weak transcription	NH-A	brain
12	chr14:81972600-81989800	Weak transcription	HMEC	breast
13	chr14:81972800-81982600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr14:81972800-81983200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr14:81973200-81983000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr14:81973400-81982400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:81973800-81982400	Weak transcription	Fetal Thymus	thymus
18	chr14:81973800-81983200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:81973800-81988800	Weak transcription	Spleen	Spleen
20	chr14:81973800-81999400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:81973800-81999400	Weak transcription	Esophagus	oesophagus
22	chr14:81974200-81983000	Weak transcription	NHEK	skin
23	chr14:81974200-81983200	Weak transcription	Gastric	stomach
24	chr14:81974200-81983400	Weak transcription	HSMM	muscle
25	chr14:81974800-81985400	Weak transcription	HUVEC	blood vessel
26	chr14:81974800-81985600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr14:81974800-81998200	Weak transcription	Fetal Brain Male	brain
28	chr14:81976000-81983200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:81976400-81983000	Weak transcription	NHLF	lung
30	chr14:81976600-81982200	Weak transcription	Psoas Muscle	Psoas
31	chr14:81976600-81982400	Weak transcription	Aorta	Aorta
32	chr14:81976600-81982400	Weak transcription	Left Ventricle	heart
33	chr14:81976600-81982800	Weak transcription	HSMMtube	muscle
34	chr14:81976600-81983200	Weak transcription	Right Atrium	heart
35	chr14:81976600-81984200	Weak transcription	Small Intestine	intestine
36	chr14:81976800-81982800	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr14:81976800-81983000	Weak transcription	Fetal Kidney	kidney
38	chr14:81976800-81983000	Weak transcription	Osteobl	bone
39	chr14:81977600-81983400	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr14:81977600-81985200	Strong transcription	Primary T helper cells fromperipheralblood	blood
41	chr14:81977600-81985600	Strong transcription	Primary T cells from cord blood	blood
42	chr14:81977800-81983400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr14:81978000-81982200	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr14:81978000-81982400	Weak transcription	Ovary	ovary
45	chr14:81978000-81983000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr14:81978000-81983000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr14:81978000-81983000	Weak transcription	NHDF-Ad	bronchial
48	chr14:81978000-81983200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr14:81978000-81983200	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr14:81978200-81982400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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