Variant report

Variant	rs11846697
Chromosome Location	chr14:81983226-81983227
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81982519..81985151-chr14:81994400..81995945,2	K562	blood:
2	chr14:81982742..81984262-chr14:81989841..81992728,2	MCF-7	breast:
3	chr14:81982643..81985778-chr14:81998621..82001086,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000071537	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11844307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851475	1.00[MEX][hapmap]
rs7147799	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8010569	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8015972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8022069	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv902120	chr14:81953242-82067555	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv565299	chr14:81983027-82586324	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81941800-81985600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:81960200-81983600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:81960400-81985800	Weak transcription	Stomach Mucosa	stomach
4	chr14:81964200-81985200	Weak transcription	K562	blood
5	chr14:81967600-81999600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr14:81971200-81983600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:81972600-81983600	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:81972600-81987000	Weak transcription	NH-A	brain
9	chr14:81972600-81989800	Weak transcription	HMEC	breast
10	chr14:81973800-81988800	Weak transcription	Spleen	Spleen
11	chr14:81973800-81999400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:81973800-81999400	Weak transcription	Esophagus	oesophagus
13	chr14:81974200-81983400	Weak transcription	HSMM	muscle
14	chr14:81974800-81985400	Weak transcription	HUVEC	blood vessel
15	chr14:81974800-81985600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:81974800-81998200	Weak transcription	Fetal Brain Male	brain
17	chr14:81976600-81984200	Weak transcription	Small Intestine	intestine
18	chr14:81977600-81983400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr14:81977600-81985200	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:81977600-81985600	Strong transcription	Primary T cells from cord blood	blood
21	chr14:81977800-81983400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:81978200-81983400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr14:81978200-81985600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr14:81978400-81983400	Strong transcription	Fetal Muscle Leg	muscle
25	chr14:81978400-81984400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:81978400-81984600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr14:81978600-81983400	Strong transcription	Fetal Lung	lung
28	chr14:81978600-81983600	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr14:81978600-81984200	Strong transcription	Fetal Muscle Trunk	muscle
30	chr14:81978600-81984600	Strong transcription	Thymus	Thymus
31	chr14:81978600-81985600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:81979000-81985600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr14:81979000-81985600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:81979200-81985200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr14:81979400-81983600	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr14:81979400-81985000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr14:81979600-81984000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr14:81979800-81984400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr14:81979800-81984400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:81979800-81985400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr14:81980000-81984600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr14:81980200-81985400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr14:81980800-81991600	Strong transcription	Fetal Brain Female	brain
44	chr14:81981000-81983600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:81981000-81985200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr14:81981000-81985600	Weak transcription	Colonic Mucosa	Colon
47	chr14:81981200-81983400	Weak transcription	Right Ventricle	heart
48	chr14:81981200-81999400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:81981600-81987400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
50	chr14:81981800-81984800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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