Variant report

Variant	rs11844442
Chromosome Location	chr14:70070048-70070049
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11845451	0.94[AFR][1000 genomes]
rs11846535	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11847303	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11848538	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs11849303	1.00[AFR][1000 genomes]
rs6573896	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs7155876	0.89[AFR][1000 genomes]
rs8004755	0.94[AFR][1000 genomes]
rs8009791	0.94[AFR][1000 genomes]
rs8014337	1.00[YRI][hapmap];0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70060400-70076600	Weak transcription	Brain Angular Gyrus	brain
2	chr14:70060800-70076800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr14:70065200-70070200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:70067200-70077000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:70067400-70077000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:70067600-70076600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:70068600-70071800	Weak transcription	HepG2	liver
8	chr14:70069000-70076800	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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