Variant report

Variant	rs8004755
Chromosome Location	chr14:70061657-70061658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11844109	0.84[AFR][1000 genomes]
rs11844442	0.94[AFR][1000 genomes]
rs11845451	1.00[AFR][1000 genomes]
rs11846535	1.00[AFR][1000 genomes]
rs11847303	0.94[AFR][1000 genomes]
rs11848538	1.00[AFR][1000 genomes]
rs11849303	0.94[AFR][1000 genomes]
rs6573896	1.00[AFR][1000 genomes]
rs7155876	0.94[AFR][1000 genomes]
rs7156989	0.82[AFR][1000 genomes]
rs7160036	0.82[AFR][1000 genomes]
rs8009791	1.00[AFR][1000 genomes]
rs8014337	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1335	chr14:70036126-70062584	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70043800-70067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:70059200-70061800	Enhancers	Fetal Muscle Leg	muscle
3	chr14:70060400-70076600	Weak transcription	Brain Angular Gyrus	brain
4	chr14:70060600-70062200	Enhancers	Fetal Stomach	stomach
5	chr14:70060600-70062200	Enhancers	NHDF-Ad	bronchial
6	chr14:70060600-70062400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:70060600-70063000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:70060800-70063000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:70060800-70076800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:70061200-70062000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr14:70061400-70062200	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr14:70061400-70062400	Enhancers	Placenta	Placenta
13	chr14:70061400-70063200	Enhancers	Esophagus	oesophagus
14	chr14:70061600-70061800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr14:70061600-70062400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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