Variant report

Variant	rs7160036
Chromosome Location	chr14:69967867-69967868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69941960..69942511-chr14:69967141..69968031,2	MCF-7	breast:
2	chr14:69959710..69961607-chr14:69966720..69969108,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11845451	0.82[AFR][1000 genomes]
rs11846535	0.82[AFR][1000 genomes]
rs11848538	0.82[AFR][1000 genomes]
rs6573896	0.82[AFR][1000 genomes]
rs7155876	0.88[AFR][1000 genomes]
rs7156989	1.00[AFR][1000 genomes]
rs8004755	0.82[AFR][1000 genomes]
rs8009791	0.82[AFR][1000 genomes]
rs8014337	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3396933	chr14:69906914-70001258	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1048882	chr14:69920881-69976694	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1052107	chr14:69922552-69969297	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1039230	chr14:69922552-69972002	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1039192	chr14:69922552-69976694	Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv456335	chr14:69928307-69971598	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv564967	chr14:69928307-69971598	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv1050258	chr14:69942127-69976694	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69965800-69968000	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr14:69966000-69969800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
3	chr14:69966000-69970000	Enhancers	Fetal Brain Male	brain
4	chr14:69966200-69968000	Enhancers	Fetal Brain Female	brain
5	chr14:69966200-69968200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:69966400-69969400	Enhancers	Psoas Muscle	Psoas
7	chr14:69966600-69968400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr14:69967200-69969600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr14:69967200-69969600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr14:69967200-69969800	Enhancers	Brain Cingulate Gyrus	brain
11	chr14:69967400-69968400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
12	chr14:69967400-69968600	Enhancers	Brain Substantia Nigra	brain
13	chr14:69967400-69969200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr14:69967400-69969400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr14:69967400-69969400	Enhancers	Brain Germinal Matrix	brain
16	chr14:69967400-69969400	Enhancers	Right Ventricle	heart
17	chr14:69967600-69968200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr14:69967600-69968200	Enhancers	Right Atrium	heart
19	chr14:69967600-69968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:69967600-69968600	Enhancers	Brain Anterior Caudate	brain
21	chr14:69967600-69968600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
22	chr14:69967600-69969400	Enhancers	Brain Angular Gyrus	brain
23	chr14:69967800-69968000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
24	chr14:69967800-69968200	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:69967800-69968400	Enhancers	HSMMtube	muscle
26	chr14:69967800-69968600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr14:69967800-69968600	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr14:69967800-69968800	Enhancers	Adipose Nuclei	Adipose
29	chr14:69967800-69968800	Enhancers	Colon Smooth Muscle	Colon
30	chr14:69967800-69968800	Enhancers	Left Ventricle	heart
31	chr14:69967800-69968800	Enhancers	Rectal Smooth Muscle	rectum
32	chr14:69967800-69969000	Enhancers	Fetal Stomach	stomach
33	chr14:69967800-69969600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links