Variant report

Variant	rs11845699
Chromosome Location	chr14:31735087-31735088
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31673985..31677853-chr14:31730006..31735257,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000092148	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11847084	1.00[ASN][1000 genomes]
rs11847145	0.92[ASN][1000 genomes]
rs2093615	0.81[ASN][1000 genomes]
rs72642554	0.82[ASN][1000 genomes]
rs72642555	0.81[ASN][1000 genomes]
rs72642556	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11845699	TRAP1	trans	lymphoblastoid	RTeQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31726400-31736000	Enhancers	Liver	Liver
2	chr14:31729400-31736200	Enhancers	Stomach Mucosa	stomach
3	chr14:31730400-31735800	Enhancers	NHLF	lung
4	chr14:31731000-31735400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr14:31731000-31735600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:31731000-31735800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:31731000-31735800	Enhancers	HMEC	breast
8	chr14:31731000-31736000	Enhancers	NHEK	skin
9	chr14:31731400-31735200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr14:31732200-31735200	Weak transcription	Fetal Kidney	kidney
11	chr14:31732200-31736000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr14:31732600-31736000	Enhancers	Fetal Intestine Large	intestine
13	chr14:31732800-31735600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:31732800-31736000	Enhancers	Fetal Intestine Small	intestine
15	chr14:31733200-31735200	Weak transcription	Right Atrium	heart
16	chr14:31733200-31735400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr14:31733400-31736200	Enhancers	NHDF-Ad	bronchial
18	chr14:31733400-31737000	Weak transcription	HSMMtube	muscle
19	chr14:31733400-31739400	Weak transcription	Esophagus	oesophagus
20	chr14:31733600-31735200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr14:31733600-31735600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:31733600-31736400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr14:31733800-31737200	Weak transcription	Fetal Lung	lung
24	chr14:31734000-31735400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:31734000-31738600	Weak transcription	HUVEC	blood vessel
26	chr14:31734400-31735600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr14:31734600-31735400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr14:31734600-31735400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr14:31734600-31735400	Enhancers	Hela-S3	cervix
30	chr14:31734600-31735400	Enhancers	NH-A	brain
31	chr14:31734600-31735600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:31734800-31735400	Enhancers	K562	blood
33	chr14:31734800-31736000	Enhancers	Duodenum Mucosa	Duodenum
34	chr14:31735000-31735200	Enhancers	Small Intestine	intestine
35	chr14:31735000-31735200	Enhancers	A549	lung
36	chr14:31735000-31735400	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr14:31735000-31735400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr14:31735000-31735400	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr14:31735000-31735400	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr14:31735000-31735400	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr14:31735000-31735400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:31735000-31735400	Enhancers	Muscle Satellite Cultured Cells	--
43	chr14:31735000-31735400	Enhancers	Brain Anterior Caudate	brain
44	chr14:31735000-31735400	Enhancers	Brain Hippocampus Middle	brain
45	chr14:31735000-31735400	Enhancers	Colon Smooth Muscle	Colon
46	chr14:31735000-31735400	Enhancers	Gastric	stomach
47	chr14:31735000-31735400	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr14:31735000-31735400	Enhancers	Rectal Smooth Muscle	rectum
49	chr14:31735000-31735400	Enhancers	Skeletal Muscle Female	skeletal muscle
50	chr14:31735000-31735400	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links