Variant report

Variant	rs72642555
Chromosome Location	chr14:31738519-31738520
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31731560..31733729-chr14:31736950..31739890,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11845699	0.81[ASN][1000 genomes]
rs11847084	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11847145	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1812760	1.00[EUR][1000 genomes]
rs2093615	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72642553	0.99[ASN][1000 genomes]
rs72642554	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72642556	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7493691	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31733400-31739400	Weak transcription	Esophagus	oesophagus
2	chr14:31734000-31738600	Weak transcription	HUVEC	blood vessel
3	chr14:31735400-31738800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr14:31735400-31738800	Weak transcription	Osteobl	bone
5	chr14:31735400-31739600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:31735400-31743200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:31735400-31743400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr14:31735600-31738600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr14:31735600-31743400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:31735800-31740400	Weak transcription	HMEC	breast
11	chr14:31736000-31739000	Weak transcription	Liver	Liver
12	chr14:31736200-31738600	Weak transcription	Stomach Mucosa	stomach
13	chr14:31736400-31740000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:31736600-31738600	Weak transcription	HepG2	liver
15	chr14:31736600-31739600	Enhancers	NHDF-Ad	bronchial
16	chr14:31736600-31740000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:31736800-31738800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr14:31737600-31739200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:31737600-31739400	Enhancers	NHLF	lung
20	chr14:31737600-31739600	Weak transcription	HSMMtube	muscle
21	chr14:31738200-31738600	Weak transcription	Fetal Lung	lung
22	chr14:31738200-31739800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links