Variant report

Variant	rs11845720
Chromosome Location	chr14:72644843-72644844
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10483841	0.90[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.90[ASN][1000 genomes]
rs11845670	0.92[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12590752	0.89[ASN][1000 genomes]
rs12880584	0.91[CHB][hapmap]
rs12882756	0.91[CHB][hapmap]
rs12883468	0.84[ASN][1000 genomes]
rs12885156	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs12890911	0.83[ASN][1000 genomes]
rs12891614	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs12892913	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.86[ASN][1000 genomes]
rs12895540	0.89[ASN][1000 genomes]
rs12896782	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2238246	0.90[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.92[ASN][1000 genomes]
rs2238247	0.90[CHB][hapmap];0.94[CHD][hapmap];0.80[GIH][hapmap];0.92[ASN][1000 genomes]
rs2238248	0.90[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.92[ASN][1000 genomes]
rs2238249	0.90[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.90[ASN][1000 genomes]
rs2238250	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs2238251	0.90[CHB][hapmap];0.90[ASN][1000 genomes]
rs2238252	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2238253	1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2283410	0.89[ASN][1000 genomes]
rs2283411	0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2283412	0.80[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2283413	0.90[CHB][hapmap];0.92[ASN][1000 genomes]
rs2283414	0.90[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2332802	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs34206394	0.90[ASN][1000 genomes]
rs34233242	0.90[ASN][1000 genomes]
rs35304669	0.90[ASN][1000 genomes]
rs7144532	0.83[ASN][1000 genomes]
rs7161011	0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs7494363	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1041492	chr14:72634606-72768970	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72626200-72645800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:72638800-72646000	Weak transcription	Right Ventricle	heart
3	chr14:72640200-72646000	Weak transcription	Left Ventricle	heart
4	chr14:72643800-72645200	Enhancers	Adipose Nuclei	Adipose
5	chr14:72644200-72652400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72644400-72645600	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links