Variant report

Variant	rs12896782
Chromosome Location	chr14:72630810-72630811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10483841	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs11845670	0.88[ASN][1000 genomes]
rs11845720	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12590752	0.81[ASN][1000 genomes]
rs12880584	0.88[CEU][hapmap];0.84[CHB][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12882756	0.87[CEU][hapmap];0.91[CHB][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12885156	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12890911	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12891614	0.81[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12892913	0.81[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12895540	0.81[ASN][1000 genomes]
rs2238246	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs2238247	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs2238248	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs2238249	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs2238250	0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs2238251	0.92[CHB][hapmap];0.83[ASN][1000 genomes]
rs2238252	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2238253	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2283410	0.81[ASN][1000 genomes]
rs2283411	0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2283412	0.83[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2283413	0.92[CHB][hapmap];0.81[ASN][1000 genomes]
rs2283414	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2332802	0.81[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34206394	0.83[ASN][1000 genomes]
rs34233242	0.83[ASN][1000 genomes]
rs35304669	0.83[ASN][1000 genomes]
rs7161011	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7494363	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
3	nsv902076	chr14:72565656-72632217	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv902077	chr14:72576679-72632217	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv902079	chr14:72583802-72632217	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv902080	chr14:72587872-72632217	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72620400-72633400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72624200-72638600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72626200-72645800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:72629400-72631200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr14:72630000-72632600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:72630600-72631000	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr14:72630600-72632200	Enhancers	GM12878-XiMat	blood
8	chr14:72630800-72631000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:72630800-72632200	Enhancers	Primary hematopoietic stem cells	blood
10	chr14:72630800-72632200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr14:72630800-72632200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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