Variant report

Variant	rs11848040
Chromosome Location	chr14:35205040-35205041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35182088..35184140-chr14:35204016..35205651,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165410	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130939	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10872890	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11156858	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11847731	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11847775	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11848931	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11851424	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11851543	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11851657	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12586232	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590077	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590658	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590746	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17526363	0.98[ASN][1000 genomes]
rs1953426	0.96[ASN][1000 genomes]
rs1953427	0.98[ASN][1000 genomes]
rs1953428	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1953429	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2383672	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56171397	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57769470	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57912472	0.92[ASN][1000 genomes]
rs59235701	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59296085	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59378282	0.99[ASN][1000 genomes]
rs61475383	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66858008	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67755118	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8004828	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8011196	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8012446	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9671483	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9671493	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9671501	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671638	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9671919	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv542030	chr14:35176687-35211119	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1040350	chr14:35196524-35245409	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1051540	chr14:35200858-35278635	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv3439110	chr14:35202001-35206399	Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv976327	chr14:35203913-35211058	Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35204200-35205200	Weak transcription	Pancreas	Pancrea
2	chr14:35204400-35210400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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