Variant report

Variant	rs17526363
Chromosome Location	chr14:35211038-35211039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr14:35211028-35211546	GM12878	blood:	n/a	chr14:35211270-35211290 chr14:35211209-35211224 chr14:35211272-35211288 chr14:35211269-35211284 chr14:35211273-35211287

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35021191..35023610-chr14:35210750..35213558,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243824	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10130939	1.00[ASN][1000 genomes]
rs10872890	1.00[ASN][1000 genomes]
rs11156858	1.00[ASN][1000 genomes]
rs11847731	0.88[ASN][1000 genomes]
rs11847775	0.83[ASN][1000 genomes]
rs11848040	0.98[ASN][1000 genomes]
rs11848931	1.00[ASN][1000 genomes]
rs11851424	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11851543	1.00[ASN][1000 genomes]
rs11851657	0.83[ASN][1000 genomes]
rs12586232	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12590077	1.00[ASN][1000 genomes]
rs12590658	1.00[ASN][1000 genomes]
rs12590746	1.00[ASN][1000 genomes]
rs1953426	0.93[ASN][1000 genomes]
rs1953427	0.95[ASN][1000 genomes]
rs1953428	1.00[ASN][1000 genomes]
rs1953429	1.00[ASN][1000 genomes]
rs2383672	1.00[ASN][1000 genomes]
rs56171397	0.97[ASN][1000 genomes]
rs57769470	1.00[ASN][1000 genomes]
rs57912472	0.90[ASN][1000 genomes]
rs59235701	1.00[ASN][1000 genomes]
rs59296085	1.00[ASN][1000 genomes]
rs59378282	0.97[ASN][1000 genomes]
rs61475383	0.95[ASN][1000 genomes]
rs66858008	1.00[ASN][1000 genomes]
rs67755118	0.99[ASN][1000 genomes]
rs8004828	0.89[ASN][1000 genomes]
rs8008897	0.80[ASN][1000 genomes]
rs8011196	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8012446	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9671483	0.90[ASN][1000 genomes]
rs9671493	1.00[ASN][1000 genomes]
rs9671501	0.98[ASN][1000 genomes]
rs9671638	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9671919	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	nsv542030	chr14:35176687-35211119	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv1040350	chr14:35196524-35245409	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
7	nsv1051540	chr14:35200858-35278635	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv976327	chr14:35203913-35211058	Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35209800-35222600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:35210400-35211200	Enhancers	Primary T cells fromperipheralblood	blood
3	chr14:35210400-35212400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:35210400-35212600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:35210400-35212800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr14:35210600-35213800	Enhancers	Liver	Liver
7	chr14:35210600-35226800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:35210800-35211800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr14:35210800-35212000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr14:35210800-35212400	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr14:35211000-35211200	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr14:35211000-35211200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:35211000-35211400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr14:35211000-35211400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr14:35211000-35211800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr14:35211000-35212000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr14:35211000-35212200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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