Variant report
| Variant | rs11848904 |
|---|---|
| Chromosome Location | chr14:63282729-63282730 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs11626516 | 0.92[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11844092 | 0.95[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11848421 | 0.95[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs12588427 | 0.92[CEU][hapmap];0.86[GIH][hapmap] |
| rs6573461 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7152953 | 0.85[AMR][1000 genomes] |
| rs7154517 | 0.81[AMR][1000 genomes] |
| rs761855 | 0.83[MEX][hapmap] |
| rs8014674 | 0.85[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv902015 | chr14:63261862-63356253 | Enhancers Weak transcription ZNF genes & repeats Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11848904 | ESR2 | cis | cerebellum | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
