Variant report

Variant	rs761855
Chromosome Location	chr14:63244445-63244446
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10047827	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs10162511	0.91[ASN][1000 genomes]
rs11626516	0.96[ASN][1000 genomes]
rs11844092	0.98[ASN][1000 genomes]
rs11848421	0.98[ASN][1000 genomes]
rs11848904	0.83[MEX][hapmap]
rs11851665	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11851948	0.91[ASN][1000 genomes]
rs1809676	0.80[CEU][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1844511	0.95[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1873274	0.95[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs1971271	0.96[ASN][1000 genomes]
rs1977631	0.91[ASN][1000 genomes]
rs2883764	0.95[CHB][hapmap];0.83[JPT][hapmap]
rs7152953	0.96[ASN][1000 genomes]
rs7154517	0.99[ASN][1000 genomes]
rs7161467	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs8005419	0.95[CHB][hapmap];0.83[JPT][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs761855	TRMT5	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63227200-63246400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:63233200-63248800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:63242200-63245000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:63243200-63244600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr14:63244400-63244600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr14:63244400-63244800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr14:63244400-63246600	Enhancers	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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