Variant report

Variant	rs7161467
Chromosome Location	chr14:63220051-63220052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10047827	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs10047855	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10162511	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11626516	0.82[ASN][1000 genomes]
rs11844092	0.83[ASN][1000 genomes]
rs11848421	0.83[ASN][1000 genomes]
rs11851665	0.83[CEU][hapmap];0.95[CHB][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11851948	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12435381	0.80[YRI][hapmap]
rs12892389	0.87[JPT][hapmap];0.80[YRI][hapmap]
rs1387755	0.82[YRI][hapmap]
rs1809676	0.88[CEU][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1844511	0.91[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1873274	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1971271	0.80[ASN][1000 genomes]
rs1977631	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2101551	0.80[YRI][hapmap]
rs28545710	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2883764	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap]
rs4902180	0.89[JPT][hapmap]
rs7152953	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7154517	0.87[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs761855	0.95[CHB][hapmap];0.83[ASN][1000 genomes]
rs8005419	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8020283	0.82[YRI][hapmap]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63212800-63221600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63218200-63220800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links