Variant report

Variant	rs10047855
Chromosome Location	chr14:63210345-63210346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10047827	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs10047858	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10047942	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10144856	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10148897	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12372902	0.95[CHB][hapmap]
rs12892389	0.91[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap]
rs171459	0.82[JPT][hapmap]
rs1844511	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs1873274	0.83[JPT][hapmap]
rs28545710	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2883764	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs4902180	0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7143550	0.81[CEU][hapmap]
rs7161467	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs8005419	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs8017931	0.81[CEU][hapmap]
rs8022524	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63202800-63212000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63207400-63216400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:63208200-63210400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:63209000-63211600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr14:63209400-63210800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr14:63210000-63210400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:63210200-63210800	Enhancers	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links