Variant report

Variant	rs28545710
Chromosome Location	chr14:63207315-63207316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10047855	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10047858	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10047942	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10144856	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10148897	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1809676	0.80[ASN][1000 genomes]
rs1844511	0.80[ASN][1000 genomes]
rs1873274	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4902180	0.82[ASN][1000 genomes]
rs56212231	0.80[ASN][1000 genomes]
rs7161467	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8005419	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63202800-63212000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:63207000-63207400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:63207200-63208400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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