Variant report

Variant	rs11849210
Chromosome Location	chr14:35813888-35813889
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35512496..35515263-chr14:35812922..35814625,2	MCF-7	breast:
2	chr14:35700471..35702762-chr14:35811850..35814628,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151327	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11844096	0.80[AMR][1000 genomes]
rs11848312	0.82[AMR][1000 genomes]
rs12433291	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12436274	0.84[AMR][1000 genomes]
rs12890150	0.90[ASN][1000 genomes]
rs12890958	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17103235	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34384582	0.82[AMR][1000 genomes]
rs35083166	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35927113	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73239022	0.80[AMR][1000 genomes]
rs73239081	0.84[AMR][1000 genomes]
rs73239096	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35800000-35815000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr14:35800600-35814400	Enhancers	Placenta	Placenta
3	chr14:35805800-35821000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:35806800-35816200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr14:35806800-35816600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:35807400-35816600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:35808200-35814400	Enhancers	Primary hematopoietic stem cells	blood
8	chr14:35809400-35814400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr14:35811000-35816200	Weak transcription	K562	blood
10	chr14:35811200-35815000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr14:35811200-35816200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr14:35811200-35816400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:35811400-35814400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr14:35811400-35816400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:35811600-35816600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:35811600-35816600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr14:35811600-35816600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr14:35811600-35816600	Weak transcription	Brain Germinal Matrix	brain
19	chr14:35811600-35816800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr14:35811800-35814800	Enhancers	Liver	Liver
21	chr14:35811800-35816200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr14:35811800-35816200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:35811800-35816200	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr14:35811800-35821400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr14:35812000-35814000	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr14:35812000-35816400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:35812000-35816600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr14:35812000-35816600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr14:35812000-35816800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr14:35812200-35814000	Enhancers	Stomach Smooth Muscle	stomach
31	chr14:35812200-35816200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:35812200-35816200	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:35812200-35818800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr14:35812200-35821000	Weak transcription	Fetal Heart	heart
35	chr14:35812600-35814000	Enhancers	Small Intestine	intestine
36	chr14:35812600-35814000	Enhancers	Stomach Mucosa	stomach
37	chr14:35812600-35814400	Enhancers	Fetal Thymus	thymus
38	chr14:35812600-35817200	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr14:35812800-35814200	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr14:35813200-35814000	Enhancers	Primary B cells from cord blood	blood
41	chr14:35813200-35814200	Enhancers	Colonic Mucosa	Colon
42	chr14:35813200-35814400	Enhancers	Pancreas	Pancrea
43	chr14:35813200-35816800	Weak transcription	Brain Angular Gyrus	brain
44	chr14:35813400-35814200	Enhancers	Primary T cells from cord blood	blood
45	chr14:35813400-35816600	Weak transcription	Fetal Lung	lung
46	chr14:35813400-35816800	Weak transcription	Esophagus	oesophagus
47	chr14:35813400-35820800	Weak transcription	Fetal Kidney	kidney
48	chr14:35813600-35816000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:35813600-35816200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:35813600-35816200	Weak transcription	Fetal Intestine Small	intestine

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