Variant report

Variant	rs11844096
Chromosome Location	chr14:35791765-35791766
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35790365..35792681-chr14:35809651..35811760,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10132920	0.83[EUR][1000 genomes]
rs10142846	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10149823	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1040839	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498331	1.00[ASN][1000 genomes]
rs11844257	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846137	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846194	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846536	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847511	1.00[ASN][1000 genomes]
rs11847515	1.00[ASN][1000 genomes]
rs11847715	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848312	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848506	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848999	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849210	0.80[AMR][1000 genomes]
rs12100980	0.83[EUR][1000 genomes]
rs12431902	1.00[ASN][1000 genomes]
rs12434128	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435977	1.00[ASN][1000 genomes]
rs12436274	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436663	1.00[ASN][1000 genomes]
rs12436672	1.00[ASN][1000 genomes]
rs12437331	1.00[ASN][1000 genomes]
rs17103147	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs17103184	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2277459	0.80[EUR][1000 genomes]
rs2415270	1.00[ASN][1000 genomes]
rs2415271	1.00[ASN][1000 genomes]
rs2415272	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415278	0.83[EUR][1000 genomes]
rs28505171	0.80[EUR][1000 genomes]
rs34384582	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35239200	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981269	1.00[ASN][1000 genomes]
rs4981271	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982245	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55758852	1.00[ASN][1000 genomes]
rs55911753	1.00[ASN][1000 genomes]
rs56658608	1.00[ASN][1000 genomes]
rs56994597	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59275448	1.00[ASN][1000 genomes]
rs59482644	1.00[ASN][1000 genomes]
rs60871552	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571697	1.00[ASN][1000 genomes]
rs6571709	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7140254	1.00[ASN][1000 genomes]
rs7141714	1.00[ASN][1000 genomes]
rs7141992	1.00[ASN][1000 genomes]
rs7142246	1.00[ASN][1000 genomes]
rs7144806	1.00[ASN][1000 genomes]
rs7144845	1.00[ASN][1000 genomes]
rs7149841	1.00[ASN][1000 genomes]
rs7150725	1.00[ASN][1000 genomes]
rs7151250	1.00[ASN][1000 genomes]
rs73234501	1.00[ASN][1000 genomes]
rs73236907	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236912	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236913	1.00[ASN][1000 genomes]
rs73236918	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236919	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236938	1.00[ASN][1000 genomes]
rs73236939	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236946	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236950	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236968	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236982	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236983	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236995	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239016	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239022	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239072	0.83[EUR][1000 genomes]
rs73239081	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239096	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73240724	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74043851	1.00[ASN][1000 genomes]
rs7492529	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009666	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs876996	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9743524	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35766200-35792000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:35769200-35800800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:35778400-35799800	Weak transcription	Stomach Mucosa	stomach
4	chr14:35782600-35795200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr14:35783400-35800600	Weak transcription	NHEK	skin
6	chr14:35784800-35804600	Weak transcription	Ovary	ovary
7	chr14:35784800-35804600	Weak transcription	Psoas Muscle	Psoas
8	chr14:35785400-35800800	Weak transcription	K562	blood
9	chr14:35787200-35793000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:35787400-35792200	Weak transcription	Fetal Kidney	kidney
11	chr14:35787400-35800800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:35787600-35791800	Weak transcription	Brain Angular Gyrus	brain
13	chr14:35787600-35792400	Weak transcription	Pancreas	Pancrea
14	chr14:35787600-35793200	Weak transcription	HMEC	breast
15	chr14:35787600-35795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr14:35787600-35800800	Weak transcription	Colonic Mucosa	Colon
17	chr14:35787600-35800800	Weak transcription	Esophagus	oesophagus
18	chr14:35787600-35803200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr14:35787800-35792200	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:35787800-35796200	Weak transcription	Gastric	stomach
21	chr14:35788000-35793000	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr14:35788000-35794000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:35788000-35804600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:35788200-35792800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr14:35788200-35793400	Weak transcription	NH-A	brain
26	chr14:35788200-35794400	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr14:35788200-35794400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:35788200-35794400	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr14:35788200-35800600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:35788200-35800800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr14:35788200-35801200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr14:35788200-35802200	Weak transcription	NHDF-Ad	bronchial
33	chr14:35788400-35791800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr14:35788400-35791800	Weak transcription	Brain Germinal Matrix	brain
35	chr14:35788400-35795400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:35788400-35796400	Weak transcription	A549	lung
37	chr14:35788400-35800600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr14:35788400-35800800	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr14:35788400-35800800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr14:35788400-35800800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr14:35788400-35800800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr14:35788400-35800800	Weak transcription	Fetal Lung	lung
43	chr14:35788400-35800800	Weak transcription	GM12878-XiMat	blood
44	chr14:35788400-35801600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr14:35788400-35802200	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:35788600-35793800	Weak transcription	HSMM	muscle
47	chr14:35788600-35794200	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr14:35788600-35801200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr14:35788600-35805800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr14:35788800-35801000	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links