Variant report

Variant	rs17103184
Chromosome Location	chr14:35780196-35780197
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:35779341..35784196-chr14:35869353..35875195,7	K562	blood:
2	chr14:35779746..35781274-chr14:35873222..35875195,2	K562	blood:
3	chr14:35779341..35783565-chr14:35868727..35873122,4	K562	blood:

Variant related genes	Relation type
ENSG00000100906	Chromatin interaction

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10132920	0.83[EUR][1000 genomes]
rs10142846	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs10149823	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs1040839	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10498331	1.00[ASN][1000 genomes]
rs11844096	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11844257	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846137	0.82[ASW][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846194	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11846536	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11847511	1.00[ASN][1000 genomes]
rs11847515	1.00[ASN][1000 genomes]
rs11847715	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848312	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848506	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848999	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12100980	0.83[EUR][1000 genomes]
rs12431902	1.00[ASN][1000 genomes]
rs12434128	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435977	1.00[ASN][1000 genomes]
rs12436274	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12436663	1.00[ASN][1000 genomes]
rs12436672	1.00[ASN][1000 genomes]
rs12437331	1.00[ASN][1000 genomes]
rs17103147	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2277459	0.80[EUR][1000 genomes]
rs2415270	1.00[ASN][1000 genomes]
rs2415271	1.00[ASN][1000 genomes]
rs2415272	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2415278	0.83[EUR][1000 genomes]
rs28505171	0.80[EUR][1000 genomes]
rs34384582	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35239200	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4981269	1.00[ASN][1000 genomes]
rs4981271	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4982245	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55758852	1.00[ASN][1000 genomes]
rs55911753	1.00[ASN][1000 genomes]
rs56658608	1.00[ASN][1000 genomes]
rs56994597	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59275448	1.00[ASN][1000 genomes]
rs59482644	1.00[ASN][1000 genomes]
rs60871552	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571697	1.00[ASN][1000 genomes]
rs6571709	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7140254	1.00[ASN][1000 genomes]
rs7141714	1.00[ASN][1000 genomes]
rs7141992	1.00[ASN][1000 genomes]
rs7142246	1.00[ASN][1000 genomes]
rs7144806	1.00[ASN][1000 genomes]
rs7144845	1.00[ASN][1000 genomes]
rs7149841	1.00[ASN][1000 genomes]
rs7150725	1.00[ASN][1000 genomes]
rs7151250	1.00[ASN][1000 genomes]
rs73234501	1.00[ASN][1000 genomes]
rs73236907	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236912	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236913	1.00[ASN][1000 genomes]
rs73236918	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236919	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236938	1.00[ASN][1000 genomes]
rs73236939	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236946	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236950	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236968	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236982	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236983	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73236995	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239016	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239022	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239072	0.83[EUR][1000 genomes]
rs73239081	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73239096	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73240724	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74043851	1.00[ASN][1000 genomes]
rs7492529	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009666	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs876996	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9743524	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv1038396	chr14:35714499-35788189	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1045288	chr14:35735886-35788189	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1043840	chr14:35739319-35791879	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35763200-35789600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:35765400-35782400	Weak transcription	K562	blood
3	chr14:35766200-35792000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr14:35769200-35780600	Weak transcription	NHDF-Ad	bronchial
5	chr14:35769200-35800800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr14:35770400-35789000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr14:35771600-35786800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr14:35772400-35788800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr14:35772400-35790400	Weak transcription	Fetal Heart	heart
10	chr14:35772600-35789000	Strong transcription	HepG2	liver
11	chr14:35772800-35788200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr14:35773000-35782200	Weak transcription	Small Intestine	intestine
13	chr14:35773200-35782000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:35773400-35789000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr14:35774200-35789800	Strong transcription	Fetal Thymus	thymus
16	chr14:35774600-35784200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:35774600-35789400	Strong transcription	Dnd41	blood
18	chr14:35775000-35789200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:35775000-35790600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr14:35775200-35783800	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr14:35775800-35785400	Strong transcription	A549	lung
22	chr14:35775800-35789200	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr14:35776400-35789000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr14:35776400-35789000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr14:35776600-35784200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr14:35776600-35788800	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr14:35776600-35789000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:35776800-35780200	Strong transcription	Thymus	Thymus
29	chr14:35776800-35780600	Strong transcription	Fetal Muscle Trunk	muscle
30	chr14:35776800-35784600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:35776800-35784600	Weak transcription	Pancreas	Pancrea
32	chr14:35776800-35788400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr14:35776800-35788600	Strong transcription	Primary T helper cells fromperipheralblood	blood
34	chr14:35776800-35789200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr14:35777000-35780600	Strong transcription	NHEK	skin
36	chr14:35777000-35780800	Strong transcription	Primary T cells from cord blood	blood
37	chr14:35777000-35788200	Strong transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:35777000-35788200	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr14:35777000-35788200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr14:35777000-35788200	Strong transcription	Primary B cells from peripheral blood	blood
41	chr14:35777000-35789000	Strong transcription	Liver	Liver
42	chr14:35777000-35789400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr14:35777200-35784600	Strong transcription	HUVEC	blood vessel
44	chr14:35777200-35784800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr14:35777200-35784800	Strong transcription	Placenta	Placenta
46	chr14:35777200-35788200	Strong transcription	Osteobl	bone
47	chr14:35777200-35788400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr14:35777200-35788600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr14:35777200-35788800	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr14:35777200-35788800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

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