Variant report

Variant	rs11850050
Chromosome Location	chr14:77950640-77950641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11850175	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2178874	0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7141931	0.87[YRI][hapmap]
rs7149349	0.87[YRI][hapmap]
rs760253	0.87[YRI][hapmap]
rs760254	0.82[YRI][hapmap]
rs8012540	1.00[AMR][1000 genomes]
rs8015874	0.87[YRI][hapmap]
rs8021886	0.87[YRI][hapmap]
rs9743492	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832835	chr14:77906706-78095207	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77945000-77951800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:77947200-77956200	Strong transcription	HepG2	liver
3	chr14:77948800-77953400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:77949000-77951600	Strong transcription	Placenta	Placenta
5	chr14:77949400-77952800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr14:77949400-77955600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:77950400-77957000	Weak transcription	Fetal Kidney	kidney
8	chr14:77950600-77950800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links