Variant report

Variant	rs11850786
Chromosome Location	chr14:25462835-25462836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25462000..25464102-chr14:25486404..25488622,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10132357	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10138510	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11628502	0.94[ASN][1000 genomes]
rs11847576	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849185	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11851504	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109371	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs17109380	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109397	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109401	0.83[CEU][hapmap]
rs17109406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109462	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109515	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs17109537	0.82[CEU][hapmap]
rs1952491	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1952499	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1958381	0.81[CEU][hapmap]
rs2077562	0.84[CEU][hapmap]
rs2094659	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28625718	0.94[ASN][1000 genomes]
rs28722832	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35106416	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57426267	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57614343	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58424382	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58590969	0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7142073	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7152812	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7153837	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7154613	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7155485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7158164	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8004566	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8008618	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8009099	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8019222	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs987056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25430000-25465800	Weak transcription	Lung	lung
2	chr14:25451800-25470200	Weak transcription	HSMMtube	muscle
3	chr14:25452800-25470000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr14:25454800-25463000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:25455000-25470200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:25455800-25463000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr14:25455800-25464400	Weak transcription	Brain Substantia Nigra	brain
8	chr14:25456000-25472800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:25456400-25466200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr14:25456400-25472800	Weak transcription	Brain Angular Gyrus	brain
11	chr14:25457200-25466200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:25458000-25470200	Weak transcription	HepG2	liver
13	chr14:25459400-25466400	Weak transcription	Fetal Intestine Large	intestine
14	chr14:25459400-25468400	Weak transcription	Fetal Lung	lung
15	chr14:25459400-25470000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:25459600-25470000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:25459600-25470000	Weak transcription	Fetal Muscle Leg	muscle
18	chr14:25459800-25466400	Weak transcription	Fetal Intestine Small	intestine
19	chr14:25459800-25470000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:25460000-25463600	Enhancers	Fetal Heart	heart
21	chr14:25461000-25463400	Enhancers	Left Ventricle	heart
22	chr14:25461400-25463400	Enhancers	Brain Anterior Caudate	brain
23	chr14:25461400-25467400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr14:25461400-25473200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr14:25461600-25472800	Weak transcription	Pancreas	Pancrea
26	chr14:25461600-25472800	Weak transcription	Right Atrium	heart
27	chr14:25462200-25464600	Enhancers	Brain Hippocampus Middle	brain
28	chr14:25462200-25464600	Enhancers	Right Ventricle	heart
29	chr14:25462400-25463000	Enhancers	Primary hematopoietic stem cells	blood
30	chr14:25462400-25463000	Enhancers	Placenta Amnion	Placenta Amnion
31	chr14:25462400-25463400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr14:25462600-25464000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:25462800-25463000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr14:25462800-25463200	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr14:25462800-25463200	Enhancers	Placenta	Placenta
36	chr14:25462800-25463600	Enhancers	HSMM	muscle

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