Variant report

Variant	rs57614343
Chromosome Location	chr14:25483664-25483665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:25475307..25477626-chr14:25483489..25485932,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10132357	0.91[ASN][1000 genomes]
rs10138510	0.91[ASN][1000 genomes]
rs11628502	0.91[ASN][1000 genomes]
rs11847576	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11849185	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11850786	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11851504	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109371	0.91[ASN][1000 genomes]
rs17109380	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17109382	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17109397	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109406	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109457	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17109462	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17109515	0.87[EUR][1000 genomes]
rs17109537	0.84[EUR][1000 genomes]
rs1952491	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1952499	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1958381	0.82[EUR][1000 genomes]
rs1958383	0.82[EUR][1000 genomes]
rs2094659	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625718	0.91[ASN][1000 genomes]
rs28722832	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35106416	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4522329	0.84[EUR][1000 genomes]
rs57426267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58424382	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58590969	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142073	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7152812	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7153837	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7154613	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7155485	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7158164	0.94[ASN][1000 genomes]
rs8004566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008618	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8009099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8019222	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs987056	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv901510	chr14:25476170-25526309	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25476400-25485000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:25479200-25488400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:25479400-25483800	Weak transcription	Brain Hippocampus Middle	brain
4	chr14:25479400-25483800	Weak transcription	Fetal Lung	lung
5	chr14:25479400-25508600	Weak transcription	Brain Anterior Caudate	brain
6	chr14:25479600-25494800	Weak transcription	Stomach Mucosa	stomach
7	chr14:25479800-25501000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr14:25480000-25484400	Weak transcription	Right Ventricle	heart
9	chr14:25480000-25485000	Weak transcription	Brain Angular Gyrus	brain
10	chr14:25480000-25490000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:25480000-25490000	Weak transcription	Right Atrium	heart
12	chr14:25480600-25483800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:25480800-25483800	Weak transcription	Fetal Heart	heart
14	chr14:25480800-25487000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr14:25481200-25507400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr14:25482600-25486000	Enhancers	HepG2	liver
17	chr14:25483400-25483800	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:25483400-25484000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr14:25483400-25484200	Enhancers	Fetal Intestine Large	intestine
20	chr14:25483400-25484600	Enhancers	Left Ventricle	heart
21	chr14:25483400-25484800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:25483400-25485200	Enhancers	Fetal Intestine Small	intestine
23	chr14:25483400-25485200	Enhancers	Pancreas	Pancrea

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