Variant report

Variant	rs11850829
Chromosome Location	chr14:79954014-79954015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10144233	1.00[JPT][hapmap]
rs1030126	1.00[JPT][hapmap]
rs10483926	1.00[JPT][hapmap]
rs11845389	1.00[AMR][1000 genomes]
rs11845684	1.00[AMR][1000 genomes]
rs11848738	1.00[EUR][1000 genomes]
rs11849655	1.00[AMR][1000 genomes]
rs11849657	1.00[JPT][hapmap]
rs11851407	1.00[JPT][hapmap]
rs11852085	1.00[EUR][1000 genomes]
rs170254	1.00[EUR][1000 genomes]
rs17109467	1.00[JPT][hapmap]
rs17109502	1.00[JPT][hapmap]
rs17109522	1.00[JPT][hapmap]
rs17109524	1.00[JPT][hapmap]
rs17109681	1.00[AMR][1000 genomes]
rs17109694	1.00[AMR][1000 genomes]
rs17764096	1.00[JPT][hapmap]
rs17764102	1.00[JPT][hapmap]
rs17836202	1.00[JPT][hapmap]
rs1895671	1.00[JPT][hapmap]
rs221438	1.00[EUR][1000 genomes]
rs221441	1.00[EUR][1000 genomes]
rs221458	1.00[EUR][1000 genomes]
rs221470	1.00[EUR][1000 genomes]
rs221472	1.00[EUR][1000 genomes]
rs221515	1.00[EUR][1000 genomes]
rs4903865	1.00[EUR][1000 genomes]
rs55708063	1.00[EUR][1000 genomes]
rs57252489	1.00[EUR][1000 genomes]
rs57281369	1.00[EUR][1000 genomes]
rs58351352	1.00[EUR][1000 genomes]
rs60502118	1.00[EUR][1000 genomes]
rs61309702	1.00[EUR][1000 genomes]
rs7153625	1.00[JPT][hapmap]
rs7153835	1.00[JPT][hapmap]
rs7154599	1.00[JPT][hapmap]
rs74068005	1.00[EUR][1000 genomes]
rs74068697	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74068698	1.00[EUR][1000 genomes]
rs74070211	1.00[EUR][1000 genomes]
rs74070212	1.00[EUR][1000 genomes]
rs74070239	1.00[EUR][1000 genomes]
rs74070242	1.00[EUR][1000 genomes]
rs74070257	1.00[EUR][1000 genomes]
rs74070258	1.00[EUR][1000 genomes]
rs74070263	1.00[EUR][1000 genomes]
rs74070265	1.00[EUR][1000 genomes]
rs74070266	1.00[EUR][1000 genomes]
rs74070271	1.00[EUR][1000 genomes]
rs74070272	1.00[EUR][1000 genomes]
rs74070273	1.00[EUR][1000 genomes]
rs74070276	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv902112	chr14:79939393-80050771	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3507680	chr14:79953817-79954213	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
6	esv3507683	chr14:79953850-79954138	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3507681	chr14:79953853-79954102	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3507682	chr14:79953893-79954102	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
9	esv3310648	chr14:79953936-79954057	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3507684	chr14:79953947-79954055	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
11	esv3310649	chr14:79953951-79954053	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	esv3507685	chr14:79953951-79954053	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79953600-79954600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:79953600-79954800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr14:79953800-79954400	Enhancers	Pancreas	Pancrea
4	chr14:79954000-79954400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:79954000-79954600	Enhancers	Stomach Smooth Muscle	stomach

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