Variant report

Variant	rs170254
Chromosome Location	chr14:80080859-80080860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11848738	1.00[EUR][1000 genomes]
rs11850829	1.00[EUR][1000 genomes]
rs11852085	1.00[EUR][1000 genomes]
rs221438	1.00[EUR][1000 genomes]
rs221441	1.00[EUR][1000 genomes]
rs221458	1.00[EUR][1000 genomes]
rs221470	1.00[EUR][1000 genomes]
rs221472	1.00[EUR][1000 genomes]
rs221515	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2543585	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs4903865	1.00[EUR][1000 genomes]
rs55708063	1.00[EUR][1000 genomes]
rs57252489	1.00[EUR][1000 genomes]
rs57281369	1.00[EUR][1000 genomes]
rs58351352	1.00[EUR][1000 genomes]
rs60502118	1.00[EUR][1000 genomes]
rs61309702	1.00[EUR][1000 genomes]
rs74068005	1.00[EUR][1000 genomes]
rs74068697	1.00[EUR][1000 genomes]
rs74068698	1.00[EUR][1000 genomes]
rs74070211	1.00[EUR][1000 genomes]
rs74070212	1.00[EUR][1000 genomes]
rs74070239	1.00[EUR][1000 genomes]
rs74070242	1.00[EUR][1000 genomes]
rs74070257	1.00[EUR][1000 genomes]
rs74070258	1.00[EUR][1000 genomes]
rs74070263	1.00[EUR][1000 genomes]
rs74070265	1.00[EUR][1000 genomes]
rs74070266	1.00[EUR][1000 genomes]
rs74070271	1.00[EUR][1000 genomes]
rs74070272	1.00[EUR][1000 genomes]
rs74070273	1.00[EUR][1000 genomes]
rs74070276	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80079800-80081200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr14:80080000-80081400	Enhancers	Brain Angular Gyrus	brain
3	chr14:80080400-80081400	Flanking Active TSS	Brain Substantia Nigra	brain
4	chr14:80080400-80081600	Enhancers	Brain Cingulate Gyrus	brain
5	chr14:80080600-80081200	Flanking Active TSS	Brain Anterior Caudate	brain
6	chr14:80080800-80081000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:80080800-80081200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr14:80080800-80081400	Flanking Active TSS	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links