Variant report

Variant	rs2543585
Chromosome Location	chr14:80080617-80080618
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs170254	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs221458	0.82[AFR][1000 genomes]
rs221515	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869542	chr14:80009619-80118315	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80079800-80080800	Enhancers	Brain Hippocampus Middle	brain
2	chr14:80079800-80081200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr14:80080000-80080800	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr14:80080000-80081400	Enhancers	Brain Angular Gyrus	brain
5	chr14:80080400-80081400	Flanking Active TSS	Brain Substantia Nigra	brain
6	chr14:80080400-80081600	Enhancers	Brain Cingulate Gyrus	brain
7	chr14:80080600-80081200	Flanking Active TSS	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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