Variant report

Variant	rs11851567
Chromosome Location	chr14:24865526-24865527
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr14:24865374-24865758	MCF-7	breast:	n/a	n/a
2	REST	chr14:24865410-24865968	MCF-7	breast:	n/a	n/a
3	GATA3	chr14:24865317-24865772	T-47D	breast:	n/a	n/a
4	ZNF263	chr14:24865466-24865856	HEK293-T-REx	kidney:	n/a	n/a
5	ESR1	chr14:24865410-24865759	T-47D	breast:	n/a	chr14:24865463-24865480
6	GATA3	chr14:24865330-24865805	T-47D	breast:	n/a	n/a
7	GATA3	chr14:24865311-24865938	MCF-7	breast:	n/a	chr14:24865843-24865851
8	MYC	chr14:24865518-24865718	K562	blood:	n/a	n/a
9	GATA3	chr14:24865177-24866092	MCF-7	breast:	n/a	chr14:24865843-24865851
10	GATA3	chr14:24865459-24865755	MCF-7	breast:	n/a	n/a
11	SPI1	chr14:24864765-24865528	HL-60	blood:	n/a	chr14:24865339-24865352
12	MYC	chr14:24865515-24865771	MCF10A-Er-Src	breast:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24833875..24836466-chr14:24865464..24867445,2	MCF-7	breast:
2	chr14:24805737..24808295-chr14:24864712..24866484,2	MCF-7	breast:
3	chr14:24800645..24802861-chr14:24865171..24867671,2	K562	blood:
4	chr14:24863615..24865970-chr14:24866797..24868949,3	K562	blood:
5	chr14:24857849..24868599-chr14:24892485..24903992,27	MCF-7	breast:
6	chr14:24842752..24851075-chr14:24856697..24867572,25	MCF-7	breast:
7	chr14:24842116..24850865-chr14:24857760..24868159,21	MCF-7	breast:
8	chr14:24863920..24868653-chr14:24896299..24901214,6	MCF-7	breast:
9	chr14:24864638..24867459-chr14:24904645..24906898,2	MCF-7	breast:
10	chr14:24865004..24865897-chr14:24881014..24881519,2	MCF-7	breast:
11	chr14:24864264..24865862-chr14:24905132..24908041,2	MCF-7	breast:
12	chr14:24682981..24685131-chr14:24864268..24866278,2	MCF-7	breast:
13	chr14:24864677..24868980-chr14:24879607..24883296,4	MCF-7	breast:

No data

Variant related genes	Relation type
NYNRIN	TF binding region
ENSG00000258973	Chromatin interaction
ENSG00000100441	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000129465	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000213920	Chromatin interaction
ENSG00000254505	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000205978	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11846223	0.86[ASN][1000 genomes]
rs57437663	0.97[ASN][1000 genomes]
rs58583694	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs982975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24859000-24867000	Weak transcription	Right Atrium	heart
2	chr14:24859200-24866200	Weak transcription	Fetal Stomach	stomach
3	chr14:24859200-24867200	Weak transcription	NHLF	lung
4	chr14:24860800-24867200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:24860800-24867200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:24860800-24867600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr14:24860800-24868000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:24861800-24866800	Weak transcription	Stomach Smooth Muscle	stomach
9	chr14:24862000-24867600	Weak transcription	Small Intestine	intestine
10	chr14:24862000-24867600	Weak transcription	A549	lung
11	chr14:24862200-24865800	Weak transcription	K562	blood
12	chr14:24862200-24866600	Weak transcription	Fetal Kidney	kidney
13	chr14:24862200-24866800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:24862200-24867000	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:24862200-24867000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr14:24862200-24867200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:24862400-24866800	Weak transcription	Fetal Intestine Large	intestine
18	chr14:24862400-24867000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:24862400-24867000	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr14:24862400-24867200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:24862400-24867200	Weak transcription	HUVEC	blood vessel
22	chr14:24862400-24867800	Weak transcription	Osteobl	bone
23	chr14:24862600-24867000	Weak transcription	Fetal Brain Female	brain
24	chr14:24863200-24865800	Enhancers	Primary hematopoietic stem cells	blood
25	chr14:24863200-24866600	Weak transcription	Fetal Intestine Small	intestine
26	chr14:24864400-24866600	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr14:24864600-24868000	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr14:24864800-24865600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
29	chr14:24864800-24865600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr14:24864800-24865600	Enhancers	Fetal Muscle Trunk	muscle
31	chr14:24864800-24866600	Enhancers	HMEC	breast
32	chr14:24864800-24867600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr14:24864800-24867600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr14:24864800-24867600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:24864800-24868000	Enhancers	Placenta	Placenta
36	chr14:24864800-24868200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr14:24864800-24868200	Enhancers	Esophagus	oesophagus
38	chr14:24865000-24865600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:24865000-24865600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:24865000-24866000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:24865000-24867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr14:24865000-24867200	Weak transcription	Gastric	stomach
43	chr14:24865000-24867400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr14:24865000-24868000	Enhancers	Fetal Thymus	thymus
45	chr14:24865200-24865600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr14:24865200-24865800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr14:24865200-24866000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr14:24865200-24866000	Enhancers	Stomach Mucosa	stomach
49	chr14:24865200-24867400	Enhancers	Placenta Amnion	Placenta Amnion
50	chr14:24865400-24865600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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