Variant report

Variant	rs57437663
Chromosome Location	chr14:24866685-24866686
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:24833875..24836466-chr14:24865464..24867445,2	MCF-7	breast:
2	chr14:24800645..24802861-chr14:24865171..24867671,2	K562	blood:
3	chr14:24857849..24868599-chr14:24892485..24903992,27	MCF-7	breast:
4	chr14:24842752..24851075-chr14:24856697..24867572,25	MCF-7	breast:
5	chr14:24842116..24850865-chr14:24857760..24868159,21	MCF-7	breast:
6	chr14:24865931..24867961-chr14:24906005..24908600,2	MCF-7	breast:
7	chr14:24863920..24868653-chr14:24896299..24901214,6	MCF-7	breast:
8	chr14:24864638..24867459-chr14:24904645..24906898,2	MCF-7	breast:
9	chr14:24864677..24868980-chr14:24879607..24883296,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100441	Chromatin interaction
ENSG00000139899	Chromatin interaction
ENSG00000100968	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000205978	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11846223	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11851567	0.97[ASN][1000 genomes]
rs58583694	0.85[ASN][1000 genomes]
rs982975	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24859000-24867000	Weak transcription	Right Atrium	heart
2	chr14:24859200-24867200	Weak transcription	NHLF	lung
3	chr14:24860800-24867200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:24860800-24867200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr14:24860800-24867600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr14:24860800-24868000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:24861800-24866800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:24862000-24867600	Weak transcription	Small Intestine	intestine
9	chr14:24862000-24867600	Weak transcription	A549	lung
10	chr14:24862200-24866800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:24862200-24867000	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:24862200-24867000	Weak transcription	Duodenum Mucosa	Duodenum
13	chr14:24862200-24867200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:24862400-24866800	Weak transcription	Fetal Intestine Large	intestine
15	chr14:24862400-24867000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr14:24862400-24867000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr14:24862400-24867200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr14:24862400-24867200	Weak transcription	HUVEC	blood vessel
19	chr14:24862400-24867800	Weak transcription	Osteobl	bone
20	chr14:24862600-24867000	Weak transcription	Fetal Brain Female	brain
21	chr14:24864600-24868000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr14:24864800-24867600	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr14:24864800-24867600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr14:24864800-24867600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:24864800-24868000	Enhancers	Placenta	Placenta
26	chr14:24864800-24868200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:24864800-24868200	Enhancers	Esophagus	oesophagus
28	chr14:24865000-24867000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr14:24865000-24867200	Weak transcription	Gastric	stomach
30	chr14:24865000-24867400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:24865000-24868000	Enhancers	Fetal Thymus	thymus
32	chr14:24865200-24867400	Enhancers	Placenta Amnion	Placenta Amnion
33	chr14:24865400-24867200	Enhancers	Fetal Lung	lung
34	chr14:24865400-24867600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:24865600-24866800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:24865600-24867000	Weak transcription	Fetal Muscle Trunk	muscle
37	chr14:24865600-24867400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr14:24865600-24867400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr14:24865600-24867600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr14:24865800-24866800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr14:24865800-24867200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr14:24865800-24867200	Weak transcription	Lung	lung
43	chr14:24865800-24867400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr14:24866000-24867000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:24866000-24867000	Weak transcription	Stomach Mucosa	stomach
46	chr14:24866000-24867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:24866000-24867600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr14:24866000-24868000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr14:24866000-24868400	Weak transcription	NHDF-Ad	bronchial
50	chr14:24866200-24867200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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