Variant report

Variant	rs11852095
Chromosome Location	chr14:65721883-65721884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65721103..65724002-chr14:65886062..65888088,2	MCF-7	breast:
2	chr14:65567923..65569908-chr14:65720468..65722497,2	MCF-7	breast:
3	chr14:65720469..65722329-chr14:65885252..65888198,2	MCF-7	breast:
4	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
5	chr14:65702798..65707565-chr14:65719899..65724349,7	MCF-7	breast:
6	chr14:65720811..65723510-chr20:45874802..45876375,2	MCF-7	breast:
7	chr14:65721766..65724259-chr14:65752829..65756528,3	MCF-7	breast:
8	chr14:65687724..65702236-chr14:65717995..65729217,67	MCF-7	breast:
9	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:
10	chr14:65721681..65725033-chr14:65872611..65875727,3	MCF-7	breast:
11	chr14:65720634..65723404-chr14:65821648..65825451,4	MCF-7	breast:
12	chr14:65720143..65726834-chr14:65876571..65883583,24	MCF-7	breast:
13	chr14:65716874..65719656-chr14:65720391..65721945,2	MCF-7	breast:
14	chr14:65718344..65729728-chr14:65875413..65882756,31	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000255002	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000125952	Chromatin interaction
ENSG00000258878	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11847250	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847283	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848132	1.00[AMR][1000 genomes]
rs11848157	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11851673	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12588190	0.80[YRI][hapmap]
rs56060562	1.00[AMR][1000 genomes]
rs56832874	1.00[AMR][1000 genomes]
rs57894445	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57933888	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58812872	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60278298	1.00[AMR][1000 genomes]
rs73276106	1.00[AMR][1000 genomes]
rs73276145	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276151	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276165	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276167	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276168	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8007858	0.91[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65711600-65722600	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr14:65713000-65722400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr14:65714000-65735400	Weak transcription	Primary B cells from cord blood	blood
5	chr14:65716600-65722000	Weak transcription	Esophagus	oesophagus
6	chr14:65716800-65723600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:65718600-65722000	Weak transcription	NHLF	lung
8	chr14:65718600-65722200	Weak transcription	Spleen	Spleen
9	chr14:65718600-65722400	Weak transcription	Gastric	stomach
10	chr14:65718800-65722200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr14:65718800-65725200	Enhancers	Placenta	Placenta
12	chr14:65719000-65722000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:65720000-65722600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr14:65720400-65725600	Enhancers	Fetal Intestine Large	intestine
15	chr14:65720600-65723200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:65720600-65726000	Enhancers	HMEC	breast
17	chr14:65720800-65722000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:65720800-65722000	Weak transcription	Thymus	Thymus
19	chr14:65720800-65722400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:65720800-65722800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr14:65720800-65723600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:65721000-65722000	Weak transcription	Brain Hippocampus Middle	brain
23	chr14:65721000-65722400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr14:65721000-65723200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr14:65721200-65723200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr14:65721200-65724000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:65721400-65722000	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr14:65721400-65722000	Enhancers	NHEK	skin
29	chr14:65721400-65723200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr14:65721400-65723400	Enhancers	NHDF-Ad	bronchial
31	chr14:65721600-65722000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr14:65721600-65722000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr14:65721600-65722200	Enhancers	Lung	lung
34	chr14:65721600-65722200	Flanking Active TSS	A549	lung
35	chr14:65721600-65722400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:65721600-65722400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr14:65721600-65722600	Flanking Active TSS	Hela-S3	cervix
38	chr14:65721600-65722600	Enhancers	Osteobl	bone
39	chr14:65721600-65722800	Enhancers	HSMM	muscle
40	chr14:65721600-65723200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr14:65721600-65723200	Enhancers	Brain Substantia Nigra	brain
42	chr14:65721600-65723200	Enhancers	Pancreas	Pancrea
43	chr14:65721600-65723200	Enhancers	NH-A	brain
44	chr14:65721600-65723400	Enhancers	Primary T cells from cord blood	blood
45	chr14:65721600-65723600	Enhancers	H1 Cell Line	embryonic stem cell
46	chr14:65721600-65723800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:65721600-65724000	Enhancers	Dnd41	blood
48	chr14:65721600-65724400	Enhancers	Fetal Thymus	thymus
49	chr14:65721600-65725600	Enhancers	Stomach Mucosa	stomach
50	chr14:65721600-65727000	Enhancers	HUVEC	blood vessel

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