Variant report

Variant	rs57894445
Chromosome Location	chr14:65723104-65723105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65721103..65724002-chr14:65886062..65888088,2	MCF-7	breast:
2	chr14:65708389..65714331-chr14:65715596..65724154,17	MCF-7	breast:
3	chr14:65702798..65707565-chr14:65719899..65724349,7	MCF-7	breast:
4	chr14:65720811..65723510-chr20:45874802..45876375,2	MCF-7	breast:
5	chr14:65722451..65723961-chr14:65842364..65844574,2	MCF-7	breast:
6	chr14:65721766..65724259-chr14:65752829..65756528,3	MCF-7	breast:
7	chr14:65687724..65702236-chr14:65717995..65729217,67	MCF-7	breast:
8	chr14:65689123..65699940-chr14:65718655..65726829,32	MCF-7	breast:
9	chr14:65722509..65724711-chr14:65800142..65803387,3	MCF-7	breast:
10	chr14:65721905..65725444-chr14:65725472..65730269,4	MCF-7	breast:
11	chr14:65721681..65725033-chr14:65872611..65875727,3	MCF-7	breast:
12	chr14:65720634..65723404-chr14:65821648..65825451,4	MCF-7	breast:
13	chr14:65583698..65586091-chr14:65722041..65724216,2	MCF-7	breast:
14	chr14:65722351..65723988-chr14:65745085..65747003,2	MCF-7	breast:
15	chr14:65720143..65726834-chr14:65876571..65883583,24	MCF-7	breast:
16	chr14:65718344..65729728-chr14:65875413..65882756,31	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000266740	Chromatin interaction
ENSG00000259078	Chromatin interaction
ENSG00000255002	Chromatin interaction
ENSG00000033170	Chromatin interaction
ENSG00000258878	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11847250	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11847283	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848132	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11848157	1.00[AMR][1000 genomes]
rs11851673	1.00[AMR][1000 genomes]
rs11852095	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56060562	1.00[AMR][1000 genomes]
rs56832874	1.00[AMR][1000 genomes]
rs57933888	1.00[AMR][1000 genomes]
rs58812872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60278298	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276106	1.00[AMR][1000 genomes]
rs73276145	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276151	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276162	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276167	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73276168	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	nsv976853	chr14:65708032-65723266	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65697200-65746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65714000-65735400	Weak transcription	Primary B cells from cord blood	blood
3	chr14:65716800-65723600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr14:65718800-65725200	Enhancers	Placenta	Placenta
5	chr14:65720400-65725600	Enhancers	Fetal Intestine Large	intestine
6	chr14:65720600-65723200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:65720600-65726000	Enhancers	HMEC	breast
8	chr14:65720800-65723600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:65721000-65723200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr14:65721200-65723200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:65721200-65724000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:65721400-65723200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:65721400-65723400	Enhancers	NHDF-Ad	bronchial
14	chr14:65721600-65723200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr14:65721600-65723200	Enhancers	Brain Substantia Nigra	brain
16	chr14:65721600-65723200	Enhancers	Pancreas	Pancrea
17	chr14:65721600-65723200	Enhancers	NH-A	brain
18	chr14:65721600-65723400	Enhancers	Primary T cells from cord blood	blood
19	chr14:65721600-65723600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:65721600-65723800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr14:65721600-65724000	Enhancers	Dnd41	blood
22	chr14:65721600-65724400	Enhancers	Fetal Thymus	thymus
23	chr14:65721600-65725600	Enhancers	Stomach Mucosa	stomach
24	chr14:65721600-65727000	Enhancers	HUVEC	blood vessel
25	chr14:65721800-65723200	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr14:65721800-65723200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:65721800-65723200	Enhancers	Brain Angular Gyrus	brain
28	chr14:65721800-65723200	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr14:65721800-65723400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr14:65721800-65723400	Enhancers	Brain Inferior Temporal Lobe	brain
31	chr14:65721800-65723400	Flanking Active TSS	HepG2	liver
32	chr14:65721800-65723600	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr14:65722000-65723200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr14:65722000-65723200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr14:65722000-65723200	Enhancers	Brain Hippocampus Middle	brain
36	chr14:65722000-65723200	Enhancers	K562	blood
37	chr14:65722000-65723400	Enhancers	Thymus	Thymus
38	chr14:65722200-65723200	Enhancers	H9 Cell Line	embryonic stem cell
39	chr14:65722200-65723200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
40	chr14:65722200-65726000	Enhancers	A549	lung
41	chr14:65722200-65728400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr14:65722400-65723200	Enhancers	Primary B cells from peripheral blood	blood
43	chr14:65722400-65723200	Enhancers	Gastric	stomach
44	chr14:65722400-65723400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr14:65722400-65723400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr14:65722400-65724200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr14:65722400-65724200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr14:65722400-65724200	Weak transcription	NHLF	lung
49	chr14:65722400-65724800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr14:65722400-65725000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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