Variant report

Variant	rs11852583
Chromosome Location	chr15:56406620-56406621
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56393395..56396114-chr15:56404185..56407853,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17819384	0.87[EUR][1000 genomes]
rs17819390	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs67883950	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761872	chr15:56211065-56426501	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56411600	Weak transcription	Fetal Stomach	stomach
2	chr15:56388800-56414400	Weak transcription	Thymus	Thymus
3	chr15:56388800-56418400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:56388800-56433000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr15:56388800-56437200	Weak transcription	Pancreas	Pancrea
6	chr15:56388800-56441600	Weak transcription	Lung	lung
7	chr15:56389400-56407600	Weak transcription	Brain Substantia Nigra	brain
8	chr15:56389400-56418400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr15:56389400-56418400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:56389600-56414400	Weak transcription	HSMMtube	muscle
11	chr15:56389800-56415600	Weak transcription	Placenta	Placenta
12	chr15:56390400-56414400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:56390600-56412600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr15:56390600-56413200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr15:56390600-56414200	Weak transcription	Fetal Lung	lung
16	chr15:56390600-56414200	Weak transcription	Left Ventricle	heart
17	chr15:56390600-56414600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr15:56390600-56416400	Weak transcription	HUVEC	blood vessel
19	chr15:56390600-56417400	Weak transcription	Adipose Nuclei	Adipose
20	chr15:56390600-56418000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr15:56390800-56418600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr15:56391000-56411800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr15:56391200-56407200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:56391800-56415800	Weak transcription	Ovary	ovary
25	chr15:56392600-56417200	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:56393800-56412400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:56394000-56414200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:56394000-56418200	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr15:56394200-56407800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr15:56394200-56417000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr15:56394400-56411000	Weak transcription	Liver	Liver
32	chr15:56394400-56411600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr15:56394400-56414000	Weak transcription	HMEC	breast
34	chr15:56394400-56414200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:56394400-56414200	Weak transcription	NH-A	brain
36	chr15:56394800-56414800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr15:56395000-56407400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr15:56395000-56411600	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr15:56395000-56412600	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:56395000-56415800	Weak transcription	Fetal Thymus	thymus
41	chr15:56395000-56418200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr15:56395200-56414200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr15:56395600-56411400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr15:56396000-56412600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:56396200-56407200	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr15:56396800-56408400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr15:56397000-56408600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:56397000-56410600	Weak transcription	Psoas Muscle	Psoas
49	chr15:56397000-56414200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr15:56397200-56414200	Weak transcription	Primary T cells from cord blood	blood

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