Variant report

Variant	rs17819384
Chromosome Location	chr15:56437774-56437775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10162834	0.87[YRI][hapmap]
rs10163161	0.88[YRI][hapmap]
rs11852583	0.87[EUR][1000 genomes]
rs11858173	0.86[AFR][1000 genomes]
rs17238601	0.88[LWK][hapmap]
rs17819390	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2465405	0.96[LWK][hapmap];1.00[YRI][hapmap]
rs2682032	0.86[AFR][1000 genomes]
rs2682050	0.87[LWK][hapmap]
rs2725871	0.88[YRI][hapmap]
rs56274791	0.88[AFR][1000 genomes]
rs59990203	0.88[ASN][1000 genomes]
rs62044114	0.88[AFR][1000 genomes]
rs67883950	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs748344	0.92[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56388800-56441600	Weak transcription	Lung	lung
2	chr15:56413400-56441600	Weak transcription	Spleen	Spleen
3	chr15:56416200-56437800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:56416200-56441600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:56419200-56438400	Weak transcription	Psoas Muscle	Psoas
6	chr15:56419600-56439000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:56421600-56437800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr15:56422200-56440400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr15:56424800-56453800	Weak transcription	Brain Substantia Nigra	brain
10	chr15:56427000-56439600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr15:56429400-56442600	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr15:56429600-56437800	Weak transcription	Small Intestine	intestine
13	chr15:56429600-56441200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:56431600-56442800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr15:56431800-56437800	Weak transcription	Ovary	ovary
16	chr15:56432000-56438000	Weak transcription	Right Ventricle	heart
17	chr15:56432400-56437800	Weak transcription	Fetal Heart	heart
18	chr15:56433600-56438400	Weak transcription	Fetal Intestine Small	intestine
19	chr15:56433800-56437800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr15:56433800-56464000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:56435200-56437800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:56435200-56440000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr15:56435200-56440600	Weak transcription	Fetal Lung	lung
24	chr15:56435200-56441800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:56435200-56442600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr15:56435200-56458800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr15:56435400-56437800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr15:56435400-56437800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:56435400-56437800	Weak transcription	Left Ventricle	heart
30	chr15:56435400-56438000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr15:56435400-56439000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:56435400-56439000	Weak transcription	Fetal Kidney	kidney
33	chr15:56435400-56439000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:56435400-56439400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr15:56435400-56440000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr15:56435400-56440000	Weak transcription	A549	lung
37	chr15:56435400-56440000	Weak transcription	GM12878-XiMat	blood
38	chr15:56435400-56440200	Weak transcription	HMEC	breast
39	chr15:56435400-56440200	Weak transcription	HSMM	muscle
40	chr15:56435400-56440400	Weak transcription	Primary T cells from cord blood	blood
41	chr15:56435400-56440400	Weak transcription	Duodenum Mucosa	Duodenum
42	chr15:56435400-56440600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr15:56435400-56441600	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr15:56435400-56441600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr15:56435400-56441600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:56435400-56441600	Weak transcription	HSMMtube	muscle
47	chr15:56435400-56441600	Weak transcription	NH-A	brain
48	chr15:56435400-56441800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr15:56435400-56442600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr15:56435400-56443000	Weak transcription	Rectal Mucosa Donor 29	rectum

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