Variant report

Variant	rs56274791
Chromosome Location	chr15:56464678-56464679
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56447230..56450204-chr15:56462832..56464767,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10152826	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10162834	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10163161	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632218	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11856691	0.81[AMR][1000 genomes]
rs11858173	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11858245	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12899534	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12909153	0.84[EUR][1000 genomes]
rs13379820	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17238601	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17819384	0.88[AFR][1000 genomes]
rs1829543	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2247838	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2460649	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2465405	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2465969	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2584689	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2682030	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2682031	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2682032	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682048	0.88[AMR][1000 genomes]
rs2682055	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2713922	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2713934	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2713937	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2713939	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2718924	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2718947	0.80[EUR][1000 genomes]
rs2725871	0.95[ASN][1000 genomes]
rs2947023	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35187662	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35840822	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62044114	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6493836	0.80[EUR][1000 genomes]
rs6493844	0.83[EUR][1000 genomes]
rs748344	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8032826	0.83[EUR][1000 genomes]
rs8041422	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs894415	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1045906	chr15:56333180-56473614	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56435400-56465200	Weak transcription	Thymus	Thymus
2	chr15:56442600-56470600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:56446600-56468400	Weak transcription	Fetal Lung	lung
4	chr15:56453000-56479600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr15:56453200-56465000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr15:56453600-56515000	Weak transcription	NHLF	lung
7	chr15:56454200-56465000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr15:56454400-56465000	Weak transcription	Fetal Stomach	stomach
9	chr15:56454400-56465600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr15:56454400-56466400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:56454400-56467000	Weak transcription	Brain Angular Gyrus	brain
12	chr15:56454400-56467200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr15:56454400-56470000	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:56454400-56470200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr15:56454400-56473400	Weak transcription	K562	blood
16	chr15:56454600-56465600	Weak transcription	Brain Substantia Nigra	brain
17	chr15:56454600-56484000	Weak transcription	Brain Anterior Caudate	brain
18	chr15:56454800-56465200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr15:56456600-56464800	Weak transcription	Stomach Smooth Muscle	stomach
20	chr15:56456600-56484800	Weak transcription	Aorta	Aorta
21	chr15:56457200-56469000	Weak transcription	Hela-S3	cervix
22	chr15:56457400-56465000	Weak transcription	Fetal Intestine Small	intestine
23	chr15:56457400-56500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:56457800-56471600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr15:56458000-56470200	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr15:56458000-56474000	Weak transcription	Pancreas	Pancrea
27	chr15:56458200-56465800	Weak transcription	Lung	lung
28	chr15:56458400-56496200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr15:56459200-56466600	Weak transcription	HUVEC	blood vessel
30	chr15:56459200-56469400	Weak transcription	Psoas Muscle	Psoas
31	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
32	chr15:56459400-56484400	Weak transcription	Spleen	Spleen
33	chr15:56459600-56473200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr15:56460200-56480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr15:56460600-56467000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:56460800-56467600	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:56461000-56466600	Weak transcription	Left Ventricle	heart
38	chr15:56461000-56466800	Weak transcription	Adipose Nuclei	Adipose
39	chr15:56461000-56467000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr15:56461000-56470200	Strong transcription	Dnd41	blood
41	chr15:56461000-56470600	Weak transcription	NHDF-Ad	bronchial
42	chr15:56461200-56469200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:56461200-56469400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr15:56461400-56465800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:56461400-56466800	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr15:56461400-56482400	Weak transcription	Ovary	ovary
47	chr15:56461600-56470600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr15:56462000-56465600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr15:56462000-56466200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:56462200-56466000	Strong transcription	Primary B cells from cord blood	blood

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