Variant report

Variant	rs8041422
Chromosome Location	chr15:56555579-56555580
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56535639..56539237-chr15:56554453..56558702,5	K562	blood:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 102 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs10152826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10162834	0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap]
rs10163161	0.88[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10438327	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[TSI][hapmap]
rs1072358	0.87[EUR][1000 genomes]
rs11632218	0.81[CEU][hapmap];0.82[CHB][hapmap];0.92[JPT][hapmap]
rs11852414	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11853962	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs11855937	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.81[EUR][1000 genomes]
rs11856170	0.86[EUR][1000 genomes]
rs11856691	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11857306	0.96[CEU][hapmap];0.89[TSI][hapmap]
rs11857374	0.80[EUR][1000 genomes]
rs11858173	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11858245	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11858489	0.88[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap]
rs12324006	0.87[EUR][1000 genomes]
rs12708449	0.82[EUR][1000 genomes]
rs12898789	0.87[EUR][1000 genomes]
rs12899534	0.87[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap]
rs12901182	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12902594	0.86[EUR][1000 genomes]
rs12907445	0.87[EUR][1000 genomes]
rs12908839	0.96[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.80[EUR][1000 genomes]
rs12910210	0.81[EUR][1000 genomes]
rs12910212	0.81[EUR][1000 genomes]
rs1426069	0.87[EUR][1000 genomes]
rs1426070	0.92[CEU][hapmap];0.83[GIH][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs1520532	0.87[EUR][1000 genomes]
rs17238601	0.88[CEU][hapmap];0.92[JPT][hapmap];0.82[TSI][hapmap]
rs17238691	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs17819444	0.87[EUR][1000 genomes]
rs1829543	0.88[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2247838	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2460649	0.84[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2465405	0.84[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2465969	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2554287	0.96[CEU][hapmap];0.87[TSI][hapmap]
rs2584689	0.88[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2682027	0.86[EUR][1000 genomes]
rs2682030	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2682031	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2682032	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2682048	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2682050	0.91[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap];0.85[ASN][1000 genomes]
rs2682055	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2713922	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2713934	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2713937	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2713939	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2713940	0.86[EUR][1000 genomes]
rs2718905	0.86[EUR][1000 genomes]
rs2718921	0.96[CEU][hapmap]
rs2718924	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2718934	0.92[CHB][hapmap]
rs2718947	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725856	0.96[CEU][hapmap];0.86[TSI][hapmap]
rs2725871	0.91[CHB][hapmap];0.92[JPT][hapmap]
rs28604556	0.94[ASN][1000 genomes]
rs28621861	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28622888	0.81[EUR][1000 genomes]
rs28866008	0.84[EUR][1000 genomes]
rs2947023	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34544252	0.87[EUR][1000 genomes]
rs34597546	0.82[EUR][1000 genomes]
rs34684027	0.87[EUR][1000 genomes]
rs35131119	0.87[EUR][1000 genomes]
rs35155290	0.84[EUR][1000 genomes]
rs35187662	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35361016	0.82[EUR][1000 genomes]
rs35470681	0.81[EUR][1000 genomes]
rs35895864	0.82[EUR][1000 genomes]
rs35968448	0.87[EUR][1000 genomes]
rs36082281	0.87[EUR][1000 genomes]
rs3784551	0.81[EUR][1000 genomes]
rs4774237	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4774238	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4774852	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4774854	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs4774855	0.84[EUR][1000 genomes]
rs4774857	0.82[EUR][1000 genomes]
rs56274791	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56319062	0.87[EUR][1000 genomes]
rs57947969	0.86[EUR][1000 genomes]
rs60648061	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61010710	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62022130	0.86[EUR][1000 genomes]
rs62044114	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62047375	0.86[EUR][1000 genomes]
rs62047376	0.85[EUR][1000 genomes]
rs62047377	0.87[EUR][1000 genomes]
rs6493844	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67639563	0.87[EUR][1000 genomes]
rs7163807	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs724100	0.86[EUR][1000 genomes]
rs748344	0.81[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.92[JPT][hapmap]
rs767142	0.87[EUR][1000 genomes]
rs8032826	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8038818	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs894415	0.88[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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