Variant report

Variant	rs2584689
Chromosome Location	chr15:56484288-56484289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56483194..56486063-chr15:56535825..56539303,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10152826	0.88[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10162834	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10163161	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10438327	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs11632218	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs11858173	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11858245	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12899534	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12909153	0.81[EUR][1000 genomes]
rs13379820	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1426070	0.81[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs17238601	1.00[CEU][hapmap];0.92[GIH][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17238691	0.92[CEU][hapmap]
rs1829543	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2247838	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2414466	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs2460649	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2465405	0.96[CEU][hapmap];0.89[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2465969	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2554287	0.92[CEU][hapmap];0.80[TSI][hapmap]
rs2682030	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2682032	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2682048	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2682055	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2713922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2713934	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2713937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2713939	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718921	0.92[CEU][hapmap]
rs2718924	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718947	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2725856	0.92[CEU][hapmap]
rs2947023	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35840822	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4774852	0.86[AMR][1000 genomes]
rs4774854	0.92[CEU][hapmap]
rs56274791	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61010710	0.86[AMR][1000 genomes]
rs62044114	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6493836	0.89[ASN][1000 genomes]
rs6493844	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7163807	0.92[CEU][hapmap]
rs748344	0.92[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs8032826	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8041422	0.88[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs894415	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56453600-56515000	Weak transcription	NHLF	lung
2	chr15:56456600-56484800	Weak transcription	Aorta	Aorta
3	chr15:56457400-56500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:56458400-56496200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
6	chr15:56459400-56484400	Weak transcription	Spleen	Spleen
7	chr15:56463600-56496600	Weak transcription	NHEK	skin
8	chr15:56464600-56497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:56465000-56486200	Weak transcription	Osteobl	bone
10	chr15:56465400-56496600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:56465800-56496000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr15:56465800-56496600	Weak transcription	HMEC	breast
13	chr15:56466000-56484600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:56466000-56497000	Weak transcription	HSMMtube	muscle
15	chr15:56466000-56500000	Weak transcription	Thymus	Thymus
16	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:56466200-56494800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr15:56466400-56495400	Weak transcription	Fetal Stomach	stomach
19	chr15:56466800-56484800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr15:56466800-56494600	Weak transcription	Fetal Intestine Large	intestine
21	chr15:56467000-56500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:56467000-56511600	Weak transcription	Fetal Intestine Small	intestine
23	chr15:56469000-56484400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr15:56469600-56491400	Weak transcription	A549	lung
25	chr15:56470200-56498800	Weak transcription	Dnd41	blood
26	chr15:56470800-56496400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:56470800-56503800	Weak transcription	Fetal Lung	lung
28	chr15:56471000-56485200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:56474200-56495000	Weak transcription	K562	blood
30	chr15:56476600-56496200	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr15:56477000-56495800	Weak transcription	Primary B cells from cord blood	blood
32	chr15:56477000-56500400	Weak transcription	Liver	Liver
33	chr15:56477200-56497000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr15:56479000-56485000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:56479800-56496200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:56480000-56495000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr15:56480000-56496200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr15:56480000-56496600	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr15:56480000-56500000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr15:56480200-56494600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr15:56480200-56497000	Weak transcription	HUVEC	blood vessel
42	chr15:56480200-56515400	Weak transcription	Hela-S3	cervix
43	chr15:56480400-56484800	Weak transcription	GM12878-XiMat	blood
44	chr15:56480800-56489800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr15:56480800-56492600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr15:56480800-56496200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr15:56481000-56485400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr15:56481400-56487800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr15:56481400-56497800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr15:56481600-56485400	Weak transcription	Pancreas	Pancrea

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