Variant report

Variant	rs2414466
Chromosome Location	chr15:56523595-56523596
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:56521792..56524721-chr15:56527729..56529667,2	MCF-7	breast:
2	chr15:56523183..56527072-chr15:56528127..56530635,4	K562	blood:
3	chr15:56522241..56525811-chr15:56534847..56539735,6	MCF-7	breast:
4	chr15:56285437..56287119-chr15:56522668..56524567,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181827	Chromatin interaction
ENSG00000069869	Chromatin interaction
ENSG00000151575	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10162834	0.83[CEU][hapmap]
rs10163161	0.83[CEU][hapmap]
rs11855094	0.89[CEU][hapmap]
rs12899534	0.81[CEU][hapmap]
rs16976890	0.92[CEU][hapmap]
rs17238601	0.82[CEU][hapmap]
rs1829543	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs2247838	0.95[ASN][1000 genomes]
rs2460649	1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs2465969	0.96[ASN][1000 genomes]
rs2584689	0.82[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs2682030	0.94[ASN][1000 genomes]
rs2682031	0.80[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.94[ASN][1000 genomes]
rs2713922	0.83[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs2713937	0.82[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs2713939	0.94[ASN][1000 genomes]
rs2718924	0.83[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs4774856	0.89[CEU][hapmap]
rs6493836	0.83[ASN][1000 genomes]
rs7181235	0.89[CEU][hapmap]
rs795786	0.92[CEU][hapmap]
rs795800	0.92[CEU][hapmap]
rs894415	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv2760380	chr15:56510123-56529955	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56508000-56534400	Weak transcription	Fetal Heart	heart
2	chr15:56508200-56524000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr15:56509000-56533600	Weak transcription	Osteobl	bone
4	chr15:56510600-56528600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr15:56513800-56523800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr15:56513800-56530200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
7	chr15:56514000-56535000	Weak transcription	Pancreas	Pancrea
8	chr15:56514600-56532400	Weak transcription	HSMMtube	muscle
9	chr15:56514800-56534800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr15:56515400-56523600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr15:56515600-56524000	Weak transcription	Aorta	Aorta
12	chr15:56515600-56524000	Weak transcription	Ovary	ovary
13	chr15:56515800-56523800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:56515800-56523800	Weak transcription	Left Ventricle	heart
15	chr15:56515800-56523800	Weak transcription	Small Intestine	intestine
16	chr15:56515800-56523800	Weak transcription	HepG2	liver
17	chr15:56515800-56524000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:56515800-56524200	Weak transcription	HUVEC	blood vessel
19	chr15:56515800-56529200	Weak transcription	Colon Smooth Muscle	Colon
20	chr15:56516200-56525600	Weak transcription	NHDF-Ad	bronchial
21	chr15:56517200-56524200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr15:56517200-56524200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr15:56518600-56527400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:56519400-56528400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr15:56519600-56524600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr15:56520000-56524200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:56520000-56527200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr15:56520200-56530200	ZNF genes & repeats	Dnd41	blood
29	chr15:56520400-56523800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr15:56520400-56525400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
31	chr15:56520400-56525800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
32	chr15:56520400-56526000	ZNF genes & repeats	Brain Germinal Matrix	brain
33	chr15:56520400-56526600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
34	chr15:56520400-56526800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:56520400-56527400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
36	chr15:56520600-56526400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr15:56520800-56523800	Weak transcription	Brain Angular Gyrus	brain
38	chr15:56520800-56523800	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr15:56520800-56524000	Weak transcription	HSMM	muscle
40	chr15:56520800-56524200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr15:56520800-56526200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr15:56520800-56526600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
43	chr15:56521000-56526000	ZNF genes & repeats	Fetal Intestine Small	intestine
44	chr15:56521000-56526200	ZNF genes & repeats	Primary B cells from cord blood	blood
45	chr15:56521200-56524200	Weak transcription	Psoas Muscle	Psoas
46	chr15:56521200-56525000	ZNF genes & repeats	Fetal Intestine Large	intestine
47	chr15:56521200-56527000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr15:56521200-56528000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr15:56521400-56526200	ZNF genes & repeats	Fetal Lung	lung
50	chr15:56521400-56526800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

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