Variant report

Variant	rs894415
Chromosome Location	chr15:56480633-56480634
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56473843..56476207-chr15:56479161..56481997,3	K562	blood:
2	chr15:56479353..56481343-chr15:56481437..56484430,2	K562	blood:

Variant related genes	Relation type
ENSG00000181827	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10152826	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10162834	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs10163161	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10438327	0.88[CEU][hapmap];0.80[TSI][hapmap]
rs11632218	0.92[CEU][hapmap];0.81[EUR][1000 genomes]
rs11858173	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11858245	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12899534	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12909153	0.81[EUR][1000 genomes]
rs13379820	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1426070	0.80[CEU][hapmap];0.85[MEX][hapmap];0.91[TSI][hapmap]
rs17238601	1.00[CEU][hapmap];0.94[GIH][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]
rs1829543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2247838	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2414466	0.85[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs2460649	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2465405	0.96[CEU][hapmap];0.92[GIH][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2465969	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2554287	0.92[CEU][hapmap]
rs2584689	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682030	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682032	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2682048	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2682055	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2713922	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2713934	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2713937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2713939	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718921	0.92[CEU][hapmap]
rs2718924	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2718947	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2725856	0.92[CEU][hapmap]
rs2947023	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35840822	0.84[EUR][1000 genomes]
rs4774852	0.85[AMR][1000 genomes]
rs4774854	0.92[CEU][hapmap]
rs56274791	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61010710	0.85[AMR][1000 genomes]
rs62044114	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6493836	0.88[ASN][1000 genomes]
rs6493844	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7163807	0.92[CEU][hapmap]
rs748344	0.92[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes]
rs8032826	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8041422	0.88[CEU][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833018	chr15:56325799-56492535	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56453600-56515000	Weak transcription	NHLF	lung
2	chr15:56454600-56484000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:56456600-56484800	Weak transcription	Aorta	Aorta
4	chr15:56457400-56500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr15:56458400-56496200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:56459200-56511000	Weak transcription	Esophagus	oesophagus
7	chr15:56459400-56484400	Weak transcription	Spleen	Spleen
8	chr15:56460200-56480800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:56461400-56482400	Weak transcription	Ovary	ovary
10	chr15:56463600-56496600	Weak transcription	NHEK	skin
11	chr15:56464000-56484000	Weak transcription	Fetal Kidney	kidney
12	chr15:56464600-56497800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:56465000-56486200	Weak transcription	Osteobl	bone
14	chr15:56465400-56496600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr15:56465600-56481000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:56465800-56496000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr15:56465800-56496600	Weak transcription	HMEC	breast
18	chr15:56466000-56482400	Weak transcription	NH-A	brain
19	chr15:56466000-56484600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr15:56466000-56497000	Weak transcription	HSMMtube	muscle
21	chr15:56466000-56500000	Weak transcription	Thymus	Thymus
22	chr15:56466000-56514200	Weak transcription	Duodenum Mucosa	Duodenum
23	chr15:56466200-56481200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:56466200-56483800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr15:56466200-56494800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:56466400-56495400	Weak transcription	Fetal Stomach	stomach
27	chr15:56466800-56484800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr15:56466800-56494600	Weak transcription	Fetal Intestine Large	intestine
29	chr15:56467000-56500400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:56467000-56511600	Weak transcription	Fetal Intestine Small	intestine
31	chr15:56469000-56484400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr15:56469600-56491400	Weak transcription	A549	lung
33	chr15:56470200-56482400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:56470200-56498800	Weak transcription	Dnd41	blood
35	chr15:56470800-56481000	Weak transcription	Psoas Muscle	Psoas
36	chr15:56470800-56482000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:56470800-56496400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr15:56470800-56503800	Weak transcription	Fetal Lung	lung
39	chr15:56471000-56485200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr15:56474200-56482400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr15:56474200-56495000	Weak transcription	K562	blood
42	chr15:56476600-56496200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr15:56477000-56495800	Weak transcription	Primary B cells from cord blood	blood
44	chr15:56477000-56500400	Weak transcription	Liver	Liver
45	chr15:56477200-56484000	Weak transcription	Right Ventricle	heart
46	chr15:56477200-56497000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr15:56477400-56482000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr15:56477800-56483000	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr15:56478200-56480800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:56478400-56481400	Enhancers	Primary T killer memory cells from peripheral blood	blood

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