Variant report

Variant	rs2718947
Chromosome Location	chr15:56582657-56582658
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56582054..56583561-chr15:56587969..56590161,2	MCF-7	breast:

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:102)

rs_ID	r²[population]
rs10152826	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10163161	0.80[EUR][1000 genomes]
rs1072358	0.89[EUR][1000 genomes]
rs11852414	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11853962	0.88[EUR][1000 genomes]
rs11855937	0.83[EUR][1000 genomes]
rs11856170	0.88[EUR][1000 genomes]
rs11856691	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11857374	0.82[EUR][1000 genomes]
rs12324006	0.89[EUR][1000 genomes]
rs12708449	0.84[EUR][1000 genomes]
rs12898789	0.89[EUR][1000 genomes]
rs12901182	0.84[EUR][1000 genomes]
rs12902594	0.88[EUR][1000 genomes]
rs12907445	0.89[EUR][1000 genomes]
rs12908839	0.82[EUR][1000 genomes]
rs12910210	0.83[EUR][1000 genomes]
rs12910212	0.83[EUR][1000 genomes]
rs1426069	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1426070	0.87[EUR][1000 genomes]
rs1477588	0.80[EUR][1000 genomes]
rs1520532	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17238691	0.88[EUR][1000 genomes]
rs17819444	0.88[EUR][1000 genomes]
rs1829543	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1863425	0.80[EUR][1000 genomes]
rs1991266	0.80[EUR][1000 genomes]
rs2098897	0.80[EUR][1000 genomes]
rs2114185	0.80[EUR][1000 genomes]
rs2247838	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2460649	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2465405	0.86[EUR][1000 genomes]
rs2465968	0.80[EUR][1000 genomes]
rs2465969	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2554287	0.80[EUR][1000 genomes]
rs2554288	0.80[EUR][1000 genomes]
rs2584689	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2682013	0.80[EUR][1000 genomes]
rs2682024	0.80[EUR][1000 genomes]
rs2682025	0.80[EUR][1000 genomes]
rs2682026	0.80[EUR][1000 genomes]
rs2682027	0.88[EUR][1000 genomes]
rs2682030	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2682031	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2682032	0.85[EUR][1000 genomes]
rs2682048	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2682050	0.82[ASN][1000 genomes]
rs2682055	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2713919	0.80[EUR][1000 genomes]
rs2713921	0.80[EUR][1000 genomes]
rs2713922	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2713934	0.84[EUR][1000 genomes]
rs2713937	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2713939	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2713940	0.87[EUR][1000 genomes]
rs2718904	0.80[EUR][1000 genomes]
rs2718905	0.88[EUR][1000 genomes]
rs2718923	0.80[EUR][1000 genomes]
rs2718924	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2725857	0.80[EUR][1000 genomes]
rs2725861	0.80[EUR][1000 genomes]
rs28604556	0.97[ASN][1000 genomes]
rs28621861	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28622888	0.83[EUR][1000 genomes]
rs28866008	0.86[EUR][1000 genomes]
rs2947023	0.85[EUR][1000 genomes]
rs34544252	0.88[EUR][1000 genomes]
rs34597546	0.84[EUR][1000 genomes]
rs34684027	0.89[EUR][1000 genomes]
rs35131119	0.89[EUR][1000 genomes]
rs35155290	0.86[EUR][1000 genomes]
rs35187662	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35361016	0.84[EUR][1000 genomes]
rs35470681	0.83[EUR][1000 genomes]
rs35895864	0.84[EUR][1000 genomes]
rs35968448	0.89[EUR][1000 genomes]
rs36082281	0.88[EUR][1000 genomes]
rs3784551	0.83[EUR][1000 genomes]
rs4774237	0.94[ASN][1000 genomes]
rs4774238	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774852	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774854	0.87[EUR][1000 genomes]
rs4774855	0.86[EUR][1000 genomes]
rs4774857	0.84[EUR][1000 genomes]
rs56274791	0.80[EUR][1000 genomes]
rs56319062	0.88[EUR][1000 genomes]
rs57947969	0.87[EUR][1000 genomes]
rs60648061	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61010710	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62022130	0.88[EUR][1000 genomes]
rs62047375	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62047376	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62047377	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6493844	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67347418	0.82[EUR][1000 genomes]
rs67639563	0.88[EUR][1000 genomes]
rs724100	0.88[EUR][1000 genomes]
rs767142	0.89[EUR][1000 genomes]
rs8032826	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8038818	0.97[ASN][1000 genomes]
rs8041422	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs894415	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56582000-56584600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:56582400-56584800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:56582600-56584000	Weak transcription	Placenta	Placenta

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