Variant report

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TCF12-7	chr15:56601442-56602860	ucscGeneNc_uc002afc_2

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10152826	0.81[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11852414	0.91[ASN][1000 genomes]
rs11856170	0.80[ASN][1000 genomes]
rs11856691	0.91[ASN][1000 genomes]
rs12324006	0.82[ASN][1000 genomes]
rs1426069	0.85[ASN][1000 genomes]
rs1520532	0.85[ASN][1000 genomes]
rs2682055	0.90[ASN][1000 genomes]
rs2718947	0.97[ASN][1000 genomes]
rs28604556	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28621861	0.98[ASN][1000 genomes]
rs34684027	0.82[ASN][1000 genomes]
rs35187662	0.97[ASN][1000 genomes]
rs35968448	0.82[ASN][1000 genomes]
rs4774237	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4774238	0.91[ASN][1000 genomes]
rs4774852	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56319062	0.82[ASN][1000 genomes]
rs60648061	0.88[ASN][1000 genomes]
rs61010710	0.91[ASN][1000 genomes]
rs62047375	0.85[ASN][1000 genomes]
rs62047376	0.85[ASN][1000 genomes]
rs62047377	0.85[ASN][1000 genomes]
rs6493844	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs67639563	0.82[ASN][1000 genomes]
rs724100	0.82[ASN][1000 genomes]
rs8032826	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs8041422	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be: