Variant report

Variant	rs61010710
Chromosome Location	chr15:56612830-56612831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr15:56612556-56612937	K562	blood:	n/a	n/a
2	MYC	chr15:56612572-56613101	K562	blood:	n/a	n/a
3	EP300	chr15:56612577-56612909	K562	blood:	n/a	n/a
4	EP300	chr15:56612421-56613007	K562	blood:	n/a	n/a
5	JUN	chr15:56612553-56612864	K562	blood:	n/a	n/a
6	ZMIZ1	chr15:56612531-56612920	K562	blood:	n/a	n/a
7	TBL1XR1	chr15:56612587-56612944	K562	blood:	n/a	n/a
8	JUND	chr15:56612552-56613466	K562	blood:	n/a	n/a
9	ATF1	chr15:56612579-56612984	K562	blood:	n/a	n/a
10	RCOR1	chr15:56612525-56612959	K562	blood:	n/a	n/a
11	TBL1XR1	chr15:56612502-56612919	K562	blood:	n/a	n/a
12	ARID3A	chr15:56612584-56613029	K562	blood:	n/a	n/a
13	CCNT2	chr15:56612634-56612894	K562	blood:	n/a	n/a
14	GTF2F1	chr15:56612709-56612857	K562	blood:	n/a	n/a
15	TAL1	chr15:56612431-56612999	K562	blood:	n/a	chr15:56612733-56612751
16	GATA2	chr15:56612579-56612922	K562	blood:	n/a	chr15:56612856-56612864
17	GATA1	chr15:56612361-56613372	PBDE	blood:	n/a	chr15:56612856-56612864
18	CEBPD	chr15:56612507-56612855	K562	blood:	n/a	n/a
19	MAZ	chr15:56612555-56612992	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56610567..56613374-chr15:56636228..56637875,2	K562	blood:

Variant related genes	Relation type
ENSG00000261174	TF binding region

Extended variants
information (count: 114 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:113)

rs_ID	r²[population]
rs10152826	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10438327	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1072358	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11852414	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11853962	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11855937	0.89[EUR][1000 genomes]
rs11856170	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11856691	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11857306	0.83[EUR][1000 genomes]
rs11857374	0.88[EUR][1000 genomes]
rs11858489	0.82[EUR][1000 genomes]
rs12324006	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12708449	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12898789	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12901182	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12902594	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12907445	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12908839	0.88[EUR][1000 genomes]
rs12910210	0.89[EUR][1000 genomes]
rs12910212	0.89[EUR][1000 genomes]
rs1402171	0.91[EUR][1000 genomes]
rs1426069	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1426070	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1477588	0.91[EUR][1000 genomes]
rs1520532	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17238691	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17819444	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1829543	0.86[AMR][1000 genomes]
rs1863425	0.91[EUR][1000 genomes]
rs1991266	0.91[EUR][1000 genomes]
rs2098897	0.91[EUR][1000 genomes]
rs2114185	0.91[EUR][1000 genomes]
rs2247838	0.85[AMR][1000 genomes]
rs2460649	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2465968	0.91[EUR][1000 genomes]
rs2465969	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2554284	0.91[EUR][1000 genomes]
rs2554287	0.91[EUR][1000 genomes]
rs2554288	0.91[EUR][1000 genomes]
rs2584689	0.86[AMR][1000 genomes]
rs2682013	0.91[EUR][1000 genomes]
rs2682015	0.85[EUR][1000 genomes]
rs2682016	0.89[EUR][1000 genomes]
rs2682024	0.91[EUR][1000 genomes]
rs2682025	0.91[EUR][1000 genomes]
rs2682026	0.91[EUR][1000 genomes]
rs2682027	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2682030	0.82[AMR][1000 genomes]
rs2682031	0.85[AMR][1000 genomes]
rs2682055	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2713919	0.91[EUR][1000 genomes]
rs2713921	0.91[EUR][1000 genomes]
rs2713922	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2713937	0.86[AMR][1000 genomes]
rs2713939	0.85[AMR][1000 genomes]
rs2713940	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2718904	0.91[EUR][1000 genomes]
rs2718905	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2718921	0.91[EUR][1000 genomes]
rs2718922	0.91[EUR][1000 genomes]
rs2718923	0.91[EUR][1000 genomes]
rs2718924	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2718947	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725850	0.91[EUR][1000 genomes]
rs2725851	0.91[EUR][1000 genomes]
rs2725852	0.91[EUR][1000 genomes]
rs2725853	0.91[EUR][1000 genomes]
rs2725855	0.89[EUR][1000 genomes]
rs2725856	0.90[EUR][1000 genomes]
rs2725857	0.91[EUR][1000 genomes]
rs2725861	0.91[EUR][1000 genomes]
rs28604556	0.91[ASN][1000 genomes]
rs28621861	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28622888	0.89[EUR][1000 genomes]
rs28866008	0.95[EUR][1000 genomes]
rs2947023	0.81[AMR][1000 genomes]
rs34544252	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34597546	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34684027	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35131119	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35155290	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35187662	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35361016	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35470681	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35895864	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35968448	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs36082281	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3784551	0.89[EUR][1000 genomes]
rs4774237	0.88[ASN][1000 genomes]
rs4774238	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774239	0.82[EUR][1000 genomes]
rs4774852	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4774854	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4774855	0.94[EUR][1000 genomes]
rs4774857	0.92[EUR][1000 genomes]
rs4774860	0.81[EUR][1000 genomes]
rs56319062	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57947969	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60648061	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62022130	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62023869	0.82[EUR][1000 genomes]
rs62047375	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62047376	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62047377	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6493844	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67347418	0.88[EUR][1000 genomes]
rs67639563	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs724100	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs767142	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8032826	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8038818	0.91[ASN][1000 genomes]
rs8041422	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs894415	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56611800-56613600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr15:56612000-56614600	Enhancers	Duodenum Mucosa	Duodenum
3	chr15:56612400-56613400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:56612400-56613600	Enhancers	K562	blood
5	chr15:56612400-56613800	Enhancers	Fetal Intestine Large	intestine
6	chr15:56612600-56613000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr15:56612600-56613400	Enhancers	Stomach Mucosa	stomach
8	chr15:56612600-56613800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr15:56612600-56613800	Enhancers	HMEC	breast
10	chr15:56612600-56614600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:56612600-56614600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:56612800-56613600	Enhancers	HepG2	liver
13	chr15:56612800-56614000	Enhancers	Fetal Intestine Small	intestine
14	chr15:56612800-56614400	Enhancers	NHEK	skin

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