Variant report

Variant	rs2682013
Chromosome Location	chr15:56617569-56617570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:119)

rs_ID	r²[population]
rs10438327	0.82[EUR][1000 genomes]
rs1072358	0.89[EUR][1000 genomes]
rs11852414	0.91[EUR][1000 genomes]
rs11853962	0.88[EUR][1000 genomes]
rs11855094	0.87[ASN][1000 genomes]
rs11855937	0.82[EUR][1000 genomes]
rs11856170	0.90[EUR][1000 genomes]
rs11856691	0.91[EUR][1000 genomes]
rs11857306	0.86[EUR][1000 genomes]
rs11857374	0.81[EUR][1000 genomes]
rs12324006	0.91[EUR][1000 genomes]
rs12592361	0.84[ASN][1000 genomes]
rs12708449	0.85[EUR][1000 genomes]
rs12898789	0.89[EUR][1000 genomes]
rs12901182	0.85[EUR][1000 genomes]
rs12902594	0.88[EUR][1000 genomes]
rs12907445	0.89[EUR][1000 genomes]
rs12908839	0.81[EUR][1000 genomes]
rs12910210	0.82[EUR][1000 genomes]
rs12910212	0.82[EUR][1000 genomes]
rs1402171	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1426069	0.91[EUR][1000 genomes]
rs1426070	0.92[EUR][1000 genomes]
rs1477588	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1520532	0.91[EUR][1000 genomes]
rs16976890	0.85[ASN][1000 genomes]
rs17238691	0.88[EUR][1000 genomes]
rs17819444	0.88[EUR][1000 genomes]
rs1863425	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1946364	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1991266	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2098897	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2114185	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2162217	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2162218	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2217059	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2465407	0.80[ASN][1000 genomes]
rs2465968	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554284	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554285	0.87[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2554287	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2554288	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682015	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2682016	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682017	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2682024	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682025	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682026	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682027	0.92[EUR][1000 genomes]
rs2682029	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2682038	0.84[ASN][1000 genomes]
rs2682041	0.86[ASN][1000 genomes]
rs2713899	0.97[ASN][1000 genomes]
rs2713910	0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2713916	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2713917	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2713919	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2713921	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2713940	0.92[EUR][1000 genomes]
rs2718904	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718905	0.92[EUR][1000 genomes]
rs2718910	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2718914	0.89[ASN][1000 genomes]
rs2718921	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718922	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718923	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2718947	0.80[EUR][1000 genomes]
rs2725840	0.88[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2725850	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725851	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725852	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725853	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725855	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725856	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725857	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725859	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2725861	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725863	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725864	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28622888	0.82[EUR][1000 genomes]
rs28866008	0.86[EUR][1000 genomes]
rs2912185	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34544252	0.88[EUR][1000 genomes]
rs34597546	0.85[EUR][1000 genomes]
rs34684027	0.91[EUR][1000 genomes]
rs35131119	0.89[EUR][1000 genomes]
rs35155290	0.88[EUR][1000 genomes]
rs35361016	0.85[EUR][1000 genomes]
rs35470681	0.84[EUR][1000 genomes]
rs35895864	0.85[EUR][1000 genomes]
rs35968448	0.91[EUR][1000 genomes]
rs36082281	0.88[EUR][1000 genomes]
rs3784551	0.82[EUR][1000 genomes]
rs3985759	0.87[ASN][1000 genomes]
rs4774238	0.91[EUR][1000 genomes]
rs4774852	0.90[EUR][1000 genomes]
rs4774854	0.89[EUR][1000 genomes]
rs4774855	0.86[EUR][1000 genomes]
rs4774857	0.85[EUR][1000 genomes]
rs56319062	0.91[EUR][1000 genomes]
rs57947969	0.87[EUR][1000 genomes]
rs60648061	0.91[EUR][1000 genomes]
rs61010710	0.91[EUR][1000 genomes]
rs62022130	0.88[EUR][1000 genomes]
rs62047371	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62047375	0.90[EUR][1000 genomes]
rs62047376	0.90[EUR][1000 genomes]
rs62047377	0.91[EUR][1000 genomes]
rs6493844	0.83[EUR][1000 genomes]
rs6493855	0.87[ASN][1000 genomes]
rs67347418	0.81[EUR][1000 genomes]
rs67639563	0.91[EUR][1000 genomes]
rs7173861	0.93[ASN][1000 genomes]
rs7181235	0.87[ASN][1000 genomes]
rs724100	0.90[EUR][1000 genomes]
rs767142	0.89[EUR][1000 genomes]
rs795791	0.81[ASN][1000 genomes]
rs795800	0.82[ASN][1000 genomes]
rs8032826	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv977718	chr15:56615388-56617888	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56613400-56623400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56613800-56619600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:56614600-56618800	Weak transcription	Placenta	Placenta
4	chr15:56614600-56619800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:56616800-56617800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:56616800-56618400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:56616800-56618400	Enhancers	NHEK	skin
8	chr15:56616800-56618600	Enhancers	Osteobl	bone
9	chr15:56617000-56617600	Enhancers	HMEC	breast
10	chr15:56617000-56618000	Enhancers	NHDF-Ad	bronchial
11	chr15:56617200-56618000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr15:56617400-56618000	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links