Variant report

Variant	rs2465407
Chromosome Location	chr15:56551947-56551948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11630363	0.91[CHB][hapmap]
rs11855094	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs12900678	0.95[CHB][hapmap]
rs12905782	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs1402171	0.80[ASN][1000 genomes]
rs1477588	0.80[ASN][1000 genomes]
rs1477590	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap]
rs1549452	0.95[CHB][hapmap]
rs16976890	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap]
rs17819438	0.95[CHB][hapmap]
rs1946364	0.82[ASN][1000 genomes]
rs2098897	0.80[ASN][1000 genomes]
rs2162217	0.82[ASN][1000 genomes]
rs2162218	0.82[ASN][1000 genomes]
rs2217059	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2249090	0.87[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap]
rs2303441	0.95[CHB][hapmap]
rs2414466	0.82[CEU][hapmap]
rs2460650	0.95[CHB][hapmap];0.83[YRI][hapmap]
rs2554284	0.80[ASN][1000 genomes]
rs2554285	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2554287	1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.80[ASN][1000 genomes]
rs2682013	0.80[ASN][1000 genomes]
rs2682017	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2682051	0.91[CHB][hapmap]
rs2682053	0.94[CHB][hapmap]
rs2713899	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2713910	0.82[ASN][1000 genomes]
rs2713933	0.91[CHB][hapmap]
rs2713936	0.91[CHB][hapmap]
rs2718921	1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs2718922	0.80[ASN][1000 genomes]
rs2718923	0.80[ASN][1000 genomes]
rs2718926	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2725840	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2725850	0.81[ASN][1000 genomes]
rs2725851	0.80[ASN][1000 genomes]
rs2725852	0.80[ASN][1000 genomes]
rs2725853	0.80[ASN][1000 genomes]
rs2725854	0.91[CHB][hapmap]
rs2725856	0.91[CHB][hapmap];0.87[JPT][hapmap];0.91[YRI][hapmap];0.80[ASN][1000 genomes]
rs2725857	0.80[ASN][1000 genomes]
rs2725859	0.82[ASN][1000 genomes]
rs2912185	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2947021	0.95[CHB][hapmap];0.81[JPT][hapmap]
rs3784552	0.81[CHB][hapmap]
rs3817406	0.95[CHB][hapmap]
rs4774856	0.93[CEU][hapmap]
rs6493856	0.90[CHB][hapmap]
rs6493858	0.91[CHB][hapmap]
rs7170307	0.81[JPT][hapmap];0.81[YRI][hapmap]
rs7181235	0.93[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs795786	0.92[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs795791	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs795800	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56548600-56553800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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