Variant report

Variant	rs2718926
Chromosome Location	chr15:56551747-56551748
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11855094	0.89[CEU][hapmap]
rs11855937	0.81[TSI][hapmap]
rs1426070	0.84[GIH][hapmap]
rs16976890	0.89[CEU][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs2414466	0.81[CEU][hapmap]
rs2465407	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2725840	0.85[AMR][1000 genomes]
rs4774856	0.88[CEU][hapmap]
rs7181235	0.89[CEU][hapmap]
rs795786	0.88[CEU][hapmap];0.86[TSI][hapmap]
rs795800	0.89[CEU][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap]
rs8041422	0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv569547	chr15:56504598-56572176	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56548600-56553800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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