Variant report

Variant	rs2713899
Chromosome Location	chr15:56612327-56612328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:56612192-56612400	HepG2	liver:	n/a	chr15:56612307-56612318

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56610567..56613374-chr15:56636228..56637875,2	K562	blood:
2	chr15:56610264..56612572-chr15:56615579..56617540,2	K562	blood:

Variant related genes	Relation type
ENSG00000261174	TF binding region

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11855094	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12592361	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1402171	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1477588	0.97[ASN][1000 genomes]
rs16976890	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1863425	0.96[ASN][1000 genomes]
rs1946364	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1961489	0.95[EUR][1000 genomes]
rs1991266	0.96[ASN][1000 genomes]
rs2098897	0.97[ASN][1000 genomes]
rs2114185	0.96[ASN][1000 genomes]
rs2162217	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2162218	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2217059	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2465407	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2465968	0.96[ASN][1000 genomes]
rs2465973	0.80[AFR][1000 genomes]
rs2554284	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2554285	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2554287	0.97[ASN][1000 genomes]
rs2554288	0.96[ASN][1000 genomes]
rs2682013	0.97[ASN][1000 genomes]
rs2682015	0.91[ASN][1000 genomes]
rs2682016	0.96[ASN][1000 genomes]
rs2682017	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682024	0.96[ASN][1000 genomes]
rs2682025	0.96[ASN][1000 genomes]
rs2682026	0.96[ASN][1000 genomes]
rs2682029	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2682038	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2682041	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2713910	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2713916	0.89[ASN][1000 genomes]
rs2713917	0.84[ASN][1000 genomes]
rs2713919	0.96[ASN][1000 genomes]
rs2713921	0.96[ASN][1000 genomes]
rs2718904	0.96[ASN][1000 genomes]
rs2718910	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2718914	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718921	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2718922	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2718923	0.97[ASN][1000 genomes]
rs2725840	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725850	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2725851	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725852	0.91[AFR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725853	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725855	0.91[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2725856	0.97[ASN][1000 genomes]
rs2725857	0.97[ASN][1000 genomes]
rs2725859	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725861	0.96[ASN][1000 genomes]
rs2725863	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2725864	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28836203	0.93[EUR][1000 genomes]
rs2912185	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35357024	0.83[EUR][1000 genomes]
rs3985759	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4774856	0.93[EUR][1000 genomes]
rs62047371	0.81[ASN][1000 genomes]
rs6493855	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7173861	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7181235	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7182758	0.94[EUR][1000 genomes]
rs795786	0.86[EUR][1000 genomes]
rs795791	0.82[ASN][1000 genomes]
rs795800	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56611800-56613600	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr15:56612000-56614600	Enhancers	Duodenum Mucosa	Duodenum

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