Variant report

Variant	rs62047371
Chromosome Location	chr15:56615958-56615959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56610264..56612572-chr15:56615579..56617540,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1402171	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1477588	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1863425	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1946364	0.82[ASN][1000 genomes]
rs1991266	0.82[ASN][1000 genomes]
rs2098897	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2114185	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2162217	0.82[ASN][1000 genomes]
rs2162218	0.82[ASN][1000 genomes]
rs2217059	0.82[ASN][1000 genomes]
rs2465968	0.82[ASN][1000 genomes]
rs2554284	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2554285	0.82[ASN][1000 genomes]
rs2554287	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2554288	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2682013	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2682015	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2682016	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2682017	0.82[ASN][1000 genomes]
rs2682024	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2682025	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2682026	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2713899	0.81[ASN][1000 genomes]
rs2713910	0.82[ASN][1000 genomes]
rs2713916	0.84[ASN][1000 genomes]
rs2713919	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2713921	0.82[ASN][1000 genomes]
rs2718904	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2718921	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2718922	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2718923	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725850	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2725851	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725852	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725853	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725855	0.91[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2725856	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725857	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2725859	0.82[ASN][1000 genomes]
rs2725861	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2912185	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv977718	chr15:56615388-56617888	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56613400-56623400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56613600-56616800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:56613800-56619600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:56614400-56616800	Weak transcription	NHEK	skin
5	chr15:56614600-56616800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:56614600-56618800	Weak transcription	Placenta	Placenta
7	chr15:56614600-56619800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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