Variant report

Variant	rs2713916
Chromosome Location	chr15:56624764-56624765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs1402171	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1477588	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1863425	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1946364	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1991266	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2098897	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2114185	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2162217	0.88[ASN][1000 genomes]
rs2162218	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2217059	0.88[ASN][1000 genomes]
rs2465968	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2554284	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554285	0.88[ASN][1000 genomes]
rs2554287	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554288	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682013	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2682015	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2682016	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682017	0.88[ASN][1000 genomes]
rs2682024	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682025	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682026	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2682029	0.81[ASN][1000 genomes]
rs2713899	0.89[ASN][1000 genomes]
rs2713910	0.88[ASN][1000 genomes]
rs2713917	0.85[ASN][1000 genomes]
rs2713919	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2713921	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718904	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2718910	0.86[ASN][1000 genomes]
rs2718914	0.80[ASN][1000 genomes]
rs2718921	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718922	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2718923	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725850	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725851	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725852	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725853	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725855	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725856	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725857	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725859	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2725861	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725863	0.81[ASN][1000 genomes]
rs2725864	0.80[ASN][1000 genomes]
rs2912185	0.88[ASN][1000 genomes]
rs62047371	0.84[ASN][1000 genomes]
rs7173861	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56620800-56637600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56623600-56630000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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