Variant report

Variant	rs2718914
Chromosome Location	chr15:56644453-56644454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56644360..56646940-chr15:56655832..56657601,2	MCF-7	breast:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs11855094	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12592361	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1402171	0.89[ASN][1000 genomes]
rs1477588	0.89[ASN][1000 genomes]
rs16976890	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1863425	0.91[ASN][1000 genomes]
rs1946364	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1961489	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1991266	0.91[ASN][1000 genomes]
rs2098897	0.89[ASN][1000 genomes]
rs2114185	0.91[ASN][1000 genomes]
rs2162217	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2162218	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2217059	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2465968	0.91[ASN][1000 genomes]
rs2554284	0.89[ASN][1000 genomes]
rs2554285	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2554287	0.89[ASN][1000 genomes]
rs2554288	0.88[ASN][1000 genomes]
rs2682013	0.89[ASN][1000 genomes]
rs2682015	0.83[ASN][1000 genomes]
rs2682016	0.88[ASN][1000 genomes]
rs2682017	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2682024	0.91[ASN][1000 genomes]
rs2682025	0.91[ASN][1000 genomes]
rs2682026	0.91[ASN][1000 genomes]
rs2682029	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2682038	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2682041	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2713899	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2713910	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2713916	0.80[ASN][1000 genomes]
rs2713919	0.91[ASN][1000 genomes]
rs2713921	0.91[ASN][1000 genomes]
rs2718904	0.91[ASN][1000 genomes]
rs2718910	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2718921	0.88[ASN][1000 genomes]
rs2718922	0.89[ASN][1000 genomes]
rs2718923	0.89[ASN][1000 genomes]
rs2725840	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2725850	0.88[ASN][1000 genomes]
rs2725851	0.89[ASN][1000 genomes]
rs2725852	0.89[ASN][1000 genomes]
rs2725853	0.89[ASN][1000 genomes]
rs2725855	0.88[ASN][1000 genomes]
rs2725856	0.89[ASN][1000 genomes]
rs2725857	0.89[ASN][1000 genomes]
rs2725859	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725861	0.91[ASN][1000 genomes]
rs2725863	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725864	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28836203	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2912185	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35357024	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3985759	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4774856	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6493855	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7173861	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7181235	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7182758	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs795786	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs795791	0.91[ASN][1000 genomes]
rs795797	0.85[ASN][1000 genomes]
rs795800	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56637800-56657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:56642600-56644600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:56642800-56644600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr15:56643000-56644600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:56643200-56645000	Weak transcription	Osteobl	bone
6	chr15:56643400-56644600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:56643800-56644800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr15:56644000-56656800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr15:56644400-56644800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:56644400-56648200	Weak transcription	HSMMtube	muscle

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