Variant report

Variant	rs7182758
Chromosome Location	chr15:56674025-56674026
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11855094	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12592361	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16976890	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1946364	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1961489	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2162217	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2162218	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2217059	0.94[EUR][1000 genomes]
rs2554285	0.95[EUR][1000 genomes]
rs2682017	0.94[EUR][1000 genomes]
rs2682029	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2682038	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2682041	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2713899	0.94[EUR][1000 genomes]
rs2713910	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2718910	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2718914	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2725840	0.87[EUR][1000 genomes]
rs2725859	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2725863	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2725864	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28836203	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2912185	0.94[EUR][1000 genomes]
rs35357024	0.84[EUR][1000 genomes]
rs3985759	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4774856	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6493855	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7173861	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7181235	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs795786	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs795791	0.82[EUR][1000 genomes]
rs795797	0.81[EUR][1000 genomes]
rs795800	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1545	chr15:56659498-56897381	Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1046891	chr15:56659587-56792033	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv471330	chr15:56659709-56896385	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv471506	chr15:56659709-56896385	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv904246	chr15:56665827-56732192	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv498847	chr15:56667038-56896395	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv2525559	chr15:56669294-56897412	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56658200-56675400	Weak transcription	Pancreas	Pancrea
2	chr15:56659600-56675400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:56660400-56674400	Weak transcription	Hela-S3	cervix
4	chr15:56664400-56685200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr15:56665200-56733400	Weak transcription	Fetal Kidney	kidney
6	chr15:56671000-56676800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:56671400-56676200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:56672000-56694600	Weak transcription	Ovary	ovary
9	chr15:56672400-56677400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:56673000-56678000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr15:56673200-56677000	Weak transcription	Gastric	stomach
12	chr15:56673400-56675800	Weak transcription	Fetal Intestine Large	intestine
13	chr15:56673400-56676600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:56673600-56675200	ZNF genes & repeats	GM12878-XiMat	blood
15	chr15:56673600-56675400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr15:56673600-56675400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:56673800-56676800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:56674000-56675000	Strong transcription	Fetal Intestine Small	intestine
19	chr15:56674000-56675400	ZNF genes & repeats	Fetal Stomach	stomach
20	chr15:56674000-56675400	Strong transcription	Thymus	Thymus

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