Variant report

Variant	rs2682015
Chromosome Location	chr15:56618208-56618209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs1072358	0.84[EUR][1000 genomes]
rs11852414	0.85[EUR][1000 genomes]
rs11853962	0.83[EUR][1000 genomes]
rs11855094	0.81[ASN][1000 genomes]
rs11856170	0.85[EUR][1000 genomes]
rs11856691	0.85[EUR][1000 genomes]
rs11857306	0.81[EUR][1000 genomes]
rs12324006	0.86[EUR][1000 genomes]
rs12708449	0.80[EUR][1000 genomes]
rs12898789	0.84[EUR][1000 genomes]
rs12901182	0.80[EUR][1000 genomes]
rs12902594	0.83[EUR][1000 genomes]
rs12907445	0.84[EUR][1000 genomes]
rs1402171	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1426069	0.85[EUR][1000 genomes]
rs1426070	0.86[EUR][1000 genomes]
rs1477588	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1520532	0.86[EUR][1000 genomes]
rs17238691	0.83[EUR][1000 genomes]
rs17819444	0.83[EUR][1000 genomes]
rs1863425	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1946364	0.92[ASN][1000 genomes]
rs1991266	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2098897	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2114185	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2162217	0.92[ASN][1000 genomes]
rs2162218	0.92[ASN][1000 genomes]
rs2217059	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2465968	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2554284	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554285	0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2554287	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2554288	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2682013	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2682016	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2682017	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2682024	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2682025	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2682026	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2682027	0.87[EUR][1000 genomes]
rs2682029	0.85[ASN][1000 genomes]
rs2682041	0.81[ASN][1000 genomes]
rs2713899	0.91[ASN][1000 genomes]
rs2713910	0.92[ASN][1000 genomes]
rs2713916	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2713917	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2713919	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2713921	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2713940	0.86[EUR][1000 genomes]
rs2718904	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2718905	0.87[EUR][1000 genomes]
rs2718910	0.89[ASN][1000 genomes]
rs2718914	0.83[ASN][1000 genomes]
rs2718921	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2718922	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2718923	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725840	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2725850	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725851	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725852	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725853	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725855	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725856	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725857	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725859	0.92[ASN][1000 genomes]
rs2725861	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725863	0.85[ASN][1000 genomes]
rs2725864	0.83[ASN][1000 genomes]
rs28866008	0.81[EUR][1000 genomes]
rs2912185	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs34544252	0.83[EUR][1000 genomes]
rs34597546	0.80[EUR][1000 genomes]
rs34684027	0.86[EUR][1000 genomes]
rs35131119	0.84[EUR][1000 genomes]
rs35155290	0.83[EUR][1000 genomes]
rs35361016	0.80[EUR][1000 genomes]
rs35895864	0.80[EUR][1000 genomes]
rs35968448	0.86[EUR][1000 genomes]
rs36082281	0.83[EUR][1000 genomes]
rs3985759	0.81[ASN][1000 genomes]
rs4774238	0.86[EUR][1000 genomes]
rs4774852	0.85[EUR][1000 genomes]
rs4774854	0.84[EUR][1000 genomes]
rs4774855	0.81[EUR][1000 genomes]
rs56319062	0.85[EUR][1000 genomes]
rs57947969	0.82[EUR][1000 genomes]
rs60648061	0.85[EUR][1000 genomes]
rs61010710	0.85[EUR][1000 genomes]
rs62022130	0.83[EUR][1000 genomes]
rs62047371	0.96[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62047375	0.85[EUR][1000 genomes]
rs62047376	0.84[EUR][1000 genomes]
rs62047377	0.85[EUR][1000 genomes]
rs6493855	0.81[ASN][1000 genomes]
rs67639563	0.85[EUR][1000 genomes]
rs7173861	0.88[ASN][1000 genomes]
rs7181235	0.81[ASN][1000 genomes]
rs724100	0.85[EUR][1000 genomes]
rs767142	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833019	chr15:56486029-56649933	Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56613400-56623400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr15:56613800-56619600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr15:56614600-56618800	Weak transcription	Placenta	Placenta
4	chr15:56614600-56619800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:56616800-56618400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:56616800-56618400	Enhancers	NHEK	skin
7	chr15:56616800-56618600	Enhancers	Osteobl	bone
8	chr15:56617600-56619400	Weak transcription	HMEC	breast
9	chr15:56617800-56619600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links